miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16256 3' -47 NC_004084.1 + 41767 0.66 0.993666
Target:  5'- cGAGGACCUCccggacGACGUCgaCGAcgaGGg -3'
miRNA:   3'- -UUUCUGGAGaaa---CUGCAGaaGCUa--CC- -5'
16256 3' -47 NC_004084.1 + 51730 0.66 0.991363
Target:  5'- --uGACCUCgagaugGACGUCgUCGAg-- -3'
miRNA:   3'- uuuCUGGAGaaa---CUGCAGaAGCUacc -5'
16256 3' -47 NC_004084.1 + 30594 0.66 0.991363
Target:  5'- --uGACCUCgcgGACGcCgcggUCGAUGu -3'
miRNA:   3'- uuuCUGGAGaaaCUGCaGa---AGCUACc -5'
16256 3' -47 NC_004084.1 + 18091 0.66 0.991363
Target:  5'- cGAGGACgaUCUcgGACGUCaggUCGAggucgGGg -3'
miRNA:   3'- -UUUCUGg-AGAaaCUGCAGa--AGCUa----CC- -5'
16256 3' -47 NC_004084.1 + 29571 0.66 0.989988
Target:  5'- uGAGGGCCaUCgccgggugGGCGUCguucgcgcgcagUUCGAUGGu -3'
miRNA:   3'- -UUUCUGG-AGaaa-----CUGCAG------------AAGCUACC- -5'
16256 3' -47 NC_004084.1 + 56272 0.67 0.988282
Target:  5'- uGAAGuCCUCg--GuCGUCUggugaccUCGGUGGa -3'
miRNA:   3'- -UUUCuGGAGaaaCuGCAGA-------AGCUACC- -5'
16256 3' -47 NC_004084.1 + 9337 0.67 0.986726
Target:  5'- cGAGACCUCUcccGAcCGUCgcacgUCGAcGGu -3'
miRNA:   3'- uUUCUGGAGAaa-CU-GCAGa----AGCUaCC- -5'
16256 3' -47 NC_004084.1 + 47009 0.67 0.984816
Target:  5'- cGAGuuCCUCgagGACGUCgcgaUCGAUGa -3'
miRNA:   3'- uUUCu-GGAGaaaCUGCAGa---AGCUACc -5'
16256 3' -47 NC_004084.1 + 52251 0.68 0.977825
Target:  5'- ---cGCCUUgcUGACGUCgccacCGAUGGa -3'
miRNA:   3'- uuucUGGAGaaACUGCAGaa---GCUACC- -5'
16256 3' -47 NC_004084.1 + 17957 0.68 0.977825
Target:  5'- cGAGGCCgugugGACGUCgUCGGUGu -3'
miRNA:   3'- uUUCUGGagaaaCUGCAGaAGCUACc -5'
16256 3' -47 NC_004084.1 + 52700 0.68 0.975036
Target:  5'- cGAGGACCUCggcccgagcGACGUCcUCGAa-- -3'
miRNA:   3'- -UUUCUGGAGaaa------CUGCAGaAGCUacc -5'
16256 3' -47 NC_004084.1 + 18905 0.68 0.971999
Target:  5'- cGAGGACgUCgcgaacgaUGACGUCcUgGAUGGg -3'
miRNA:   3'- -UUUCUGgAGaa------ACUGCAGaAgCUACC- -5'
16256 3' -47 NC_004084.1 + 28935 0.69 0.961308
Target:  5'- --cGGCCUCgggagcGCGUCgacagcgUCGAUGGg -3'
miRNA:   3'- uuuCUGGAGaaac--UGCAGa------AGCUACC- -5'
16256 3' -47 NC_004084.1 + 21609 0.7 0.932149
Target:  5'- -uGGACCgUCUcggGACGaUCUUCGAcuUGGa -3'
miRNA:   3'- uuUCUGG-AGAaa-CUGC-AGAAGCU--ACC- -5'
16256 3' -47 NC_004084.1 + 2828 0.7 0.926226
Target:  5'- --cGACCUCaaccucGGCGUCcgCGGUGGa -3'
miRNA:   3'- uuuCUGGAGaaa---CUGCAGaaGCUACC- -5'
16256 3' -47 NC_004084.1 + 15923 0.73 0.802638
Target:  5'- ---uGCgCUCUUUGACGUCUUUGA-GGu -3'
miRNA:   3'- uuucUG-GAGAAACUGCAGAAGCUaCC- -5'
16256 3' -47 NC_004084.1 + 55550 1.09 0.007996
Target:  5'- cAAAGACCUCUUUGACGUCUUCGAUGGu -3'
miRNA:   3'- -UUUCUGGAGAAACUGCAGAAGCUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.