miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16256 5' -59 NC_004084.1 + 53036 0.66 0.565414
Target:  5'- -aCUGCUGUGGACGCCcAGGUUcgacgucGAGa -3'
miRNA:   3'- uaGGUGGCGCCUGCGGcUCCAA-------CUCc -5'
16256 5' -59 NC_004084.1 + 9442 0.66 0.549755
Target:  5'- ---gGCCGC-GACGUCGAcgaagacgacuacugGGUUGAGGa -3'
miRNA:   3'- uaggUGGCGcCUGCGGCU---------------CCAACUCC- -5'
16256 5' -59 NC_004084.1 + 54250 0.66 0.545602
Target:  5'- -aUCAgCGCcGuCGgCGAGGUUGAGGu -3'
miRNA:   3'- uaGGUgGCGcCuGCgGCUCCAACUCC- -5'
16256 5' -59 NC_004084.1 + 45756 0.67 0.474894
Target:  5'- aGUCCGCuCGaucgGGACGCCGAuggaGGUcaUGuGGg -3'
miRNA:   3'- -UAGGUG-GCg---CCUGCGGCU----CCA--ACuCC- -5'
16256 5' -59 NC_004084.1 + 47124 0.67 0.465157
Target:  5'- cAUCCGgUGC-GACGCCGAGcgaGAGGg -3'
miRNA:   3'- -UAGGUgGCGcCUGCGGCUCcaaCUCC- -5'
16256 5' -59 NC_004084.1 + 54125 0.68 0.446002
Target:  5'- -aUCACCgGCgGGACGUCGuGGacuUUGAGGa -3'
miRNA:   3'- uaGGUGG-CG-CCUGCGGCuCC---AACUCC- -5'
16256 5' -59 NC_004084.1 + 9083 0.68 0.427296
Target:  5'- -aUCGCCGCGGuACGCCGAccGGgcGAu- -3'
miRNA:   3'- uaGGUGGCGCC-UGCGGCU--CCaaCUcc -5'
16256 5' -59 NC_004084.1 + 8200 0.69 0.382642
Target:  5'- gGUUCGCgGauGGCGUCGAGGUUGAa- -3'
miRNA:   3'- -UAGGUGgCgcCUGCGGCUCCAACUcc -5'
16256 5' -59 NC_004084.1 + 30588 0.69 0.374091
Target:  5'- cGUCCGugaccUCGCGGACGCCGcGGUcGAu- -3'
miRNA:   3'- -UAGGU-----GGCGCCUGCGGCuCCAaCUcc -5'
16256 5' -59 NC_004084.1 + 29285 0.69 0.374091
Target:  5'- --gCACCGCcGAcacCGCCGAGGagGAGGc -3'
miRNA:   3'- uagGUGGCGcCU---GCGGCUCCaaCUCC- -5'
16256 5' -59 NC_004084.1 + 50459 0.69 0.36567
Target:  5'- cGUCCugCggucgGCGGugucguuCGCCGAuGUUGAGGg -3'
miRNA:   3'- -UAGGugG-----CGCCu------GCGGCUcCAACUCC- -5'
16256 5' -59 NC_004084.1 + 53142 0.69 0.357381
Target:  5'- cAUCCGCUGCgGGACGUCGucGacGAGGc -3'
miRNA:   3'- -UAGGUGGCG-CCUGCGGCucCaaCUCC- -5'
16256 5' -59 NC_004084.1 + 2239 0.7 0.32326
Target:  5'- -gCCAgCGCGGAgaucuccucggucuUGCCGuuGUUGAGGa -3'
miRNA:   3'- uaGGUgGCGCCU--------------GCGGCucCAACUCC- -5'
16256 5' -59 NC_004084.1 + 6870 0.71 0.303107
Target:  5'- cUCCAgccggUCGUGGAUGCCGAGGUacgucGGGa -3'
miRNA:   3'- uAGGU-----GGCGCCUGCGGCUCCAac---UCC- -5'
16256 5' -59 NC_004084.1 + 36607 0.72 0.255401
Target:  5'- -cUCACCGUcGACGCUGAcGUUGAGGu -3'
miRNA:   3'- uaGGUGGCGcCUGCGGCUcCAACUCC- -5'
16256 5' -59 NC_004084.1 + 21522 0.72 0.23101
Target:  5'- cGUUCGCCGCcGAguuCGCCGAGcUUGAGGa -3'
miRNA:   3'- -UAGGUGGCGcCU---GCGGCUCcAACUCC- -5'
16256 5' -59 NC_004084.1 + 55585 1.08 0.000639
Target:  5'- gAUCCACCGCGGACGCCGAGGUUGAGGu -3'
miRNA:   3'- -UAGGUGGCGCCUGCGGCUCCAACUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.