miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16258 3' -53.5 NC_004084.1 + 41223 0.66 0.827705
Target:  5'- --aCGCCGUaCUUCACCaGGGUcu-ACGa -3'
miRNA:   3'- gagGCGGUA-GAAGUGG-CCCAacuUGC- -5'
16258 3' -53.5 NC_004084.1 + 47970 0.66 0.827705
Target:  5'- gUCCGCUcgaGUaCUUCugCGGGaUGcACGa -3'
miRNA:   3'- gAGGCGG---UA-GAAGugGCCCaACuUGC- -5'
16258 3' -53.5 NC_004084.1 + 28842 0.66 0.80913
Target:  5'- gUUCGCCGUCUcggUCACgaaccucgaaCGGG-UGGGCGu -3'
miRNA:   3'- gAGGCGGUAGA---AGUG----------GCCCaACUUGC- -5'
16258 3' -53.5 NC_004084.1 + 27030 0.66 0.80913
Target:  5'- -aCCGgC--CUUCGCCGGGcUGAACu -3'
miRNA:   3'- gaGGCgGuaGAAGUGGCCCaACUUGc -5'
16258 3' -53.5 NC_004084.1 + 35756 0.67 0.803408
Target:  5'- cCUCUGCCAUCUcgaucccguagagguUCgagccggaggcGCCGGGaaGGACGc -3'
miRNA:   3'- -GAGGCGGUAGA---------------AG-----------UGGCCCaaCUUGC- -5'
16258 3' -53.5 NC_004084.1 + 56711 0.68 0.728245
Target:  5'- -gCCGCCAUCcucCGCUGGGacucGGACGu -3'
miRNA:   3'- gaGGCGGUAGaa-GUGGCCCaa--CUUGC- -5'
16258 3' -53.5 NC_004084.1 + 33186 0.69 0.685119
Target:  5'- gUUCGCCcccgauuUUUUCACCGGGUUaGAcCGg -3'
miRNA:   3'- gAGGCGGu------AGAAGUGGCCCAA-CUuGC- -5'
16258 3' -53.5 NC_004084.1 + 54536 0.69 0.641174
Target:  5'- uUCCGCUugaagaugaGUUcgUUCGCgGGGUUGGACa -3'
miRNA:   3'- gAGGCGG---------UAG--AAGUGgCCCAACUUGc -5'
16258 3' -53.5 NC_004084.1 + 41033 0.69 0.641174
Target:  5'- aCUCUGCCGgcgagaUCcUCACCGGcg-GAACGg -3'
miRNA:   3'- -GAGGCGGU------AGaAGUGGCCcaaCUUGC- -5'
16258 3' -53.5 NC_004084.1 + 52447 0.69 0.641174
Target:  5'- aCUCCGUCcUCcggCGCUGGGUUGuACa -3'
miRNA:   3'- -GAGGCGGuAGaa-GUGGCCCAACuUGc -5'
16258 3' -53.5 NC_004084.1 + 29626 0.72 0.510867
Target:  5'- -cCCGCUcgCcugCGCgGGGUUGAACGu -3'
miRNA:   3'- gaGGCGGuaGaa-GUGgCCCAACUUGC- -5'
16258 3' -53.5 NC_004084.1 + 15614 0.75 0.357606
Target:  5'- -aCCGgCGUC--CACCGGGUUGAACu -3'
miRNA:   3'- gaGGCgGUAGaaGUGGCCCAACUUGc -5'
16258 3' -53.5 NC_004084.1 + 55046 1.1 0.001527
Target:  5'- gCUCCGCCAUCUUCACCGGGUUGAACGg -3'
miRNA:   3'- -GAGGCGGUAGAAGUGGCCCAACUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.