miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16258 5' -62.9 NC_004084.1 + 14622 0.66 0.396755
Target:  5'- gGCGCUCCUCgCCgCCGgacucuccgCCGGcGAgCGCc -3'
miRNA:   3'- gCGCGAGGAG-GG-GGCa--------GGCU-CU-GCGc -5'
16258 5' -62.9 NC_004084.1 + 57264 0.66 0.363603
Target:  5'- cCGC-CUCCUUCUCCGg-CGGGGCGUu -3'
miRNA:   3'- -GCGcGAGGAGGGGGCagGCUCUGCGc -5'
16258 5' -62.9 NC_004084.1 + 48335 0.66 0.363603
Target:  5'- uCGCGC-CC-CCUUCGUCCucGGCGUGc -3'
miRNA:   3'- -GCGCGaGGaGGGGGCAGGcuCUGCGC- -5'
16258 5' -62.9 NC_004084.1 + 50051 0.67 0.317583
Target:  5'- -aUGCUCgUCCCUCa-CCGGGugGCGa -3'
miRNA:   3'- gcGCGAGgAGGGGGcaGGCUCugCGC- -5'
16258 5' -62.9 NC_004084.1 + 30572 0.68 0.296269
Target:  5'- uCGUGUUCCUUCagCUCGUCCGuGAccuCGCGg -3'
miRNA:   3'- -GCGCGAGGAGG--GGGCAGGCuCU---GCGC- -5'
16258 5' -62.9 NC_004084.1 + 23569 0.68 0.295578
Target:  5'- uCGCGCUCC-CCgCUGUCguCGAGAgccagauCGCGa -3'
miRNA:   3'- -GCGCGAGGaGGgGGCAG--GCUCU-------GCGC- -5'
16258 5' -62.9 NC_004084.1 + 27827 0.68 0.282688
Target:  5'- cCGCGCcaCCUCaCCCCGcUCCGGuuCGCc -3'
miRNA:   3'- -GCGCGa-GGAG-GGGGC-AGGCUcuGCGc -5'
16258 5' -62.9 NC_004084.1 + 58289 0.68 0.276084
Target:  5'- gGCGCUCUgcggacgaggucUCCUCCGUCCacauccaccaucGAGACgGCa -3'
miRNA:   3'- gCGCGAGG------------AGGGGGCAGG------------CUCUG-CGc -5'
16258 5' -62.9 NC_004084.1 + 16777 0.7 0.211416
Target:  5'- gGCGCUCCUCgCaCCGUUCGc--CGCGg -3'
miRNA:   3'- gCGCGAGGAGgG-GGCAGGCucuGCGC- -5'
16258 5' -62.9 NC_004084.1 + 57976 0.7 0.201161
Target:  5'- gGCG-UCCUCCgCCGUCuCGAGGuCGCc -3'
miRNA:   3'- gCGCgAGGAGGgGGCAG-GCUCU-GCGc -5'
16258 5' -62.9 NC_004084.1 + 30846 0.72 0.164367
Target:  5'- gCGaCGCUgCCUCCUggcgaCCGUCCGGGAgGCc -3'
miRNA:   3'- -GC-GCGA-GGAGGG-----GGCAGGCUCUgCGc -5'
16258 5' -62.9 NC_004084.1 + 814 0.74 0.120472
Target:  5'- gCGCGaaCUCCUCaaCCCGUUCGAGACGgGc -3'
miRNA:   3'- -GCGC--GAGGAGg-GGGCAGGCUCUGCgC- -5'
16258 5' -62.9 NC_004084.1 + 55080 1.07 0.000351
Target:  5'- gCGCGCUCCUCCCCCGUCCGAGACGCGc -3'
miRNA:   3'- -GCGCGAGGAGGGGGCAGGCUCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.