miRNA display CGI


Results 61 - 80 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 27033 0.69 0.567674
Target:  5'- uCGGCGUagUCCgcccCGUCGAgUUCGACCa -3'
miRNA:   3'- uGCUGCGg-AGGa---GCAGCUaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 50268 0.7 0.515407
Target:  5'- gGCGGCGaggUCCUCGaCGucugCCGACCa -3'
miRNA:   3'- -UGCUGCgg-AGGAGCaGCuaa-GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 19674 0.7 0.536109
Target:  5'- gACG-UGCCUCCccUgGUCG-UUCUGGCCg -3'
miRNA:   3'- -UGCuGCGGAGG--AgCAGCuAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 16078 0.7 0.546569
Target:  5'- uCGAguucCGCCgCCUCGUCGAUcucgucCCGACg -3'
miRNA:   3'- uGCU----GCGGaGGAGCAGCUAa-----GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 52546 0.7 0.556038
Target:  5'- gUGGCGgucugcuCCUCCUCGUCGAUcgUCUuGAUCg -3'
miRNA:   3'- uGCUGC-------GGAGGAGCAGCUA--AGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 57086 0.7 0.515407
Target:  5'- cCGACGgaguaCUCCUaCGUCGAgcgCCGugCu -3'
miRNA:   3'- uGCUGCg----GAGGA-GCAGCUaa-GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 57524 0.7 0.52572
Target:  5'- gACGACGCCgacagCGauacCGAUUCCGACg -3'
miRNA:   3'- -UGCUGCGGagga-GCa---GCUAAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 35341 0.7 0.546569
Target:  5'- cCGACGUCcaCCUCGUCGcgucgCCGGCg -3'
miRNA:   3'- uGCUGCGGa-GGAGCAGCuaa--GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 35051 0.7 0.546569
Target:  5'- cGCGACGgaUCCgaaCGUCGAcgUCGACCc -3'
miRNA:   3'- -UGCUGCggAGGa--GCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 12753 0.7 0.515407
Target:  5'- uCGACGCCgaccgUCUCGUCGuugUCGGCa -3'
miRNA:   3'- uGCUGCGGa----GGAGCAGCuaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 46731 0.71 0.459337
Target:  5'- cCGACGCCguguagacgucgcugUCCUCGccguagUCGucgCCGACCg -3'
miRNA:   3'- uGCUGCGG---------------AGGAGC------AGCuaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 36486 0.71 0.47405
Target:  5'- -gGACGCCgacaauuUCCUCGacgucgaacUCGAUgaggaggCCGACCg -3'
miRNA:   3'- ugCUGCGG-------AGGAGC---------AGCUAa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 16637 0.71 0.484989
Target:  5'- gUGACGcCCUCgUCGUCGAcgUCGuCCg -3'
miRNA:   3'- uGCUGC-GGAGgAGCAGCUaaGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 32355 0.71 0.495037
Target:  5'- uUGACGUCUCCUCGUacagCGGUgagaCGACg -3'
miRNA:   3'- uGCUGCGGAGGAGCA----GCUAag--GCUGg -5'
16259 3' -55.4 NC_004084.1 + 7272 0.71 0.455454
Target:  5'- uCGAuCGCCUCCUCGuUCGGgaUCGcCCa -3'
miRNA:   3'- uGCU-GCGGAGGAGC-AGCUaaGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 9500 0.71 0.455454
Target:  5'- cCGGCGCCgaCCggaaGUCGuggCCGACCg -3'
miRNA:   3'- uGCUGCGGa-GGag--CAGCuaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 37323 0.71 0.465194
Target:  5'- gACGACGCUgaacgCUUCGgCGAUcCCGACg -3'
miRNA:   3'- -UGCUGCGGa----GGAGCaGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 1871 0.71 0.466173
Target:  5'- gACGuCGCCUCCUggacugccacgccaaGUCGGggauggggCCGACCg -3'
miRNA:   3'- -UGCuGCGGAGGAg--------------CAGCUaa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 3812 0.72 0.445826
Target:  5'- aACGGCGaCCucgauccagUCUUCGUCGAcgCCGACg -3'
miRNA:   3'- -UGCUGC-GG---------AGGAGCAGCUaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 10123 0.72 0.425985
Target:  5'- uCGACGCaCUCCggguuccgcaguUCGUCGGUucccuccUCCGGCUc -3'
miRNA:   3'- uGCUGCG-GAGG------------AGCAGCUA-------AGGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.