Results 61 - 80 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 16688 | 0.67 | 0.717229 |
Target: 5'- aGCGGgGCCUCgaCGUUGG-UCgCGAUCg -3' miRNA: 3'- -UGCUgCGGAGgaGCAGCUaAG-GCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 19199 | 0.67 | 0.727638 |
Target: 5'- gACGACGUCUCCgacagaGAUgucgCCGugCg -3' miRNA: 3'- -UGCUGCGGAGGagcag-CUAa---GGCugG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 30845 | 0.66 | 0.737955 |
Target: 5'- aGCGACgcuGCCUCCUgG-CGAccgUCCGggagGCCc -3' miRNA: 3'- -UGCUG---CGGAGGAgCaGCUa--AGGC----UGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 22339 | 0.66 | 0.737955 |
Target: 5'- gACGGCGaCCucgucgcggUCCUCGUCGuAUcCCcACCa -3' miRNA: 3'- -UGCUGC-GG---------AGGAGCAGC-UAaGGcUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 18260 | 0.66 | 0.737955 |
Target: 5'- gAUGACGUCUUCgaaccggucgaCGUUGAggCCGAUCa -3' miRNA: 3'- -UGCUGCGGAGGa----------GCAGCUaaGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 39525 | 0.66 | 0.748171 |
Target: 5'- cGCGACGUccucgaggauCUCCUCGUgauggccagcgCGAUcgacUCGACCg -3' miRNA: 3'- -UGCUGCG----------GAGGAGCA-----------GCUAa---GGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 43264 | 0.66 | 0.748171 |
Target: 5'- cCGACGUucaCUCCUCG-CGAUggCUGuACCc -3' miRNA: 3'- uGCUGCG---GAGGAGCaGCUAa-GGC-UGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 54800 | 0.66 | 0.748171 |
Target: 5'- cCGAuCGCCUCgUaGUCGG-UCCaGGCCg -3' miRNA: 3'- uGCU-GCGGAGgAgCAGCUaAGG-CUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 2659 | 0.66 | 0.748171 |
Target: 5'- gUGACGCCUCgUaacCGAUUCCcuggugguucGACCg -3' miRNA: 3'- uGCUGCGGAGgAgcaGCUAAGG----------CUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 35370 | 0.66 | 0.748171 |
Target: 5'- aACGACGCCacugCCgucagUGUCGAagcUCCaGAUCa -3' miRNA: 3'- -UGCUGCGGa---GGa----GCAGCUa--AGG-CUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 32222 | 0.66 | 0.748171 |
Target: 5'- -aGAUG-CUCCUCGaCGAcgCCGACg -3' miRNA: 3'- ugCUGCgGAGGAGCaGCUaaGGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 50551 | 0.66 | 0.758274 |
Target: 5'- aGCGGaGUCUCCUCGaUCaugUCCGuCCa -3' miRNA: 3'- -UGCUgCGGAGGAGC-AGcuaAGGCuGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 52795 | 0.66 | 0.758274 |
Target: 5'- aGCGGCuGCUUCagga--GGUUCCGACCg -3' miRNA: 3'- -UGCUG-CGGAGgagcagCUAAGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 22156 | 0.66 | 0.758274 |
Target: 5'- cGCGAgCGCCUCggcgcaCUCGagGAcgUCGACCc -3' miRNA: 3'- -UGCU-GCGGAG------GAGCagCUaaGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 16146 | 0.66 | 0.758274 |
Target: 5'- gACGAacUGCg-CgUCGUCGcgUCCGAUCu -3' miRNA: 3'- -UGCU--GCGgaGgAGCAGCuaAGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 36641 | 0.66 | 0.768253 |
Target: 5'- gUGACgGCC-CCgaCGUCGAUgccgCCGAUCc -3' miRNA: 3'- uGCUG-CGGaGGa-GCAGCUAa---GGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 37038 | 0.66 | 0.768253 |
Target: 5'- uCGcCGCCUCacggUCGUCGAUgUCGAUg -3' miRNA: 3'- uGCuGCGGAGg---AGCAGCUAaGGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 27647 | 0.66 | 0.768253 |
Target: 5'- cGCGuACGCCUCgaggaggUCGcUCGAcUCCGGuCCg -3' miRNA: 3'- -UGC-UGCGGAGg------AGC-AGCUaAGGCU-GG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 811 | 0.66 | 0.768253 |
Target: 5'- gGCGAuCGUggaggUCCUCGUCGAUgCUGAUg -3' miRNA: 3'- -UGCU-GCGg----AGGAGCAGCUAaGGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 39612 | 0.66 | 0.77712 |
Target: 5'- gACGugGCCggcgacgUCCUCGaCGAgu-CGAUCg -3' miRNA: 3'- -UGCugCGG-------AGGAGCaGCUaagGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home