Results 41 - 60 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 31132 | 0.74 | 0.348081 |
Target: 5'- aGCGGCGCCgcgaUCGUcagCGGUUCgGACCg -3' miRNA: 3'- -UGCUGCGGagg-AGCA---GCUAAGgCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 30943 | 0.68 | 0.621177 |
Target: 5'- uCGACGUCgagCUCGagGAcgCCGACCg -3' miRNA: 3'- uGCUGCGGag-GAGCagCUaaGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 30845 | 0.66 | 0.737955 |
Target: 5'- aGCGACgcuGCCUCCUgG-CGAccgUCCGggagGCCc -3' miRNA: 3'- -UGCUG---CGGAGGAgCaGCUa--AGGC----UGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 29348 | 0.68 | 0.66419 |
Target: 5'- gACGACGCCcCCgagCGggCGGU-CgCGGCCu -3' miRNA: 3'- -UGCUGCGGaGGa--GCa-GCUAaG-GCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 28135 | 0.66 | 0.778098 |
Target: 5'- aAUGACGuCCUCgUC-UCGAUacUUCGGCUg -3' miRNA: 3'- -UGCUGC-GGAGgAGcAGCUA--AGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 27983 | 0.68 | 0.66419 |
Target: 5'- -gGACGUCgUCCUCGccaUCGcUUCCGucGCCg -3' miRNA: 3'- ugCUGCGG-AGGAGC---AGCuAAGGC--UGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 27647 | 0.66 | 0.768253 |
Target: 5'- cGCGuACGCCUCgaggaggUCGcUCGAcUCCGGuCCg -3' miRNA: 3'- -UGC-UGCGGAGg------AGC-AGCUaAGGCU-GG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 27033 | 0.69 | 0.567674 |
Target: 5'- uCGGCGUagUCCgcccCGUCGAgUUCGACCa -3' miRNA: 3'- uGCUGCGg-AGGa---GCAGCUaAGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 22510 | 0.68 | 0.653455 |
Target: 5'- aACcGCGUCaUCCUCGacgaCGAUcgccUCCGGCCg -3' miRNA: 3'- -UGcUGCGG-AGGAGCa---GCUA----AGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 22339 | 0.66 | 0.737955 |
Target: 5'- gACGGCGaCCucgucgcggUCCUCGUCGuAUcCCcACCa -3' miRNA: 3'- -UGCUGC-GG---------AGGAGCAGC-UAaGGcUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 22156 | 0.66 | 0.758274 |
Target: 5'- cGCGAgCGCCUCggcgcaCUCGagGAcgUCGACCc -3' miRNA: 3'- -UGCU-GCGGAG------GAGCagCUaaGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 21895 | 0.69 | 0.575112 |
Target: 5'- cGCGAUcggcgucucggucgGCCUCCUCaUCGAgUUCGACg -3' miRNA: 3'- -UGCUG--------------CGGAGGAGcAGCUaAGGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 19674 | 0.7 | 0.536109 |
Target: 5'- gACG-UGCCUCCccUgGUCG-UUCUGGCCg -3' miRNA: 3'- -UGCuGCGGAGG--AgCAGCuAAGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 19199 | 0.67 | 0.727638 |
Target: 5'- gACGACGUCUCCgacagaGAUgucgCCGugCg -3' miRNA: 3'- -UGCUGCGGAGGagcag-CUAa---GGCugG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 18784 | 0.68 | 0.638397 |
Target: 5'- uCGGCGUCgcguacgaucgaCUCGUCGAggacgucgCCGGCCa -3' miRNA: 3'- uGCUGCGGag----------GAGCAGCUaa------GGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 18260 | 0.66 | 0.737955 |
Target: 5'- gAUGACGUCUUCgaaccggucgaCGUUGAggCCGAUCa -3' miRNA: 3'- -UGCUGCGGAGGa----------GCAGCUaaGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 17332 | 0.66 | 0.778098 |
Target: 5'- gGCGACgGCCcgcaucgUCUCGUCGAcguacucgCgGACCg -3' miRNA: 3'- -UGCUG-CGGa------GGAGCAGCUaa------GgCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 16688 | 0.67 | 0.717229 |
Target: 5'- aGCGGgGCCUCgaCGUUGG-UCgCGAUCg -3' miRNA: 3'- -UGCUgCGGAGgaGCAGCUaAG-GCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 16637 | 0.71 | 0.484989 |
Target: 5'- gUGACGcCCUCgUCGUCGAcgUCGuCCg -3' miRNA: 3'- uGCUGC-GGAGgAGCAGCUaaGGCuGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 16388 | 0.66 | 0.787799 |
Target: 5'- gACGAUGUCgaccgCCUCGcUCGcga-CGGCCa -3' miRNA: 3'- -UGCUGCGGa----GGAGC-AGCuaagGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home