Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 39732 | 0.69 | 0.610424 |
Target: 5'- cUGGCcCCagUCCUCGUCGggUCUGGCg -3' miRNA: 3'- uGCUGcGG--AGGAGCAGCuaAGGCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 54188 | 1.12 | 0.000816 |
Target: 5'- aACGACGCCUCCUCGUCGAUUCCGACCg -3' miRNA: 3'- -UGCUGCGGAGGAGCAGCUAAGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 50605 | 0.69 | 0.58898 |
Target: 5'- aGCG-UGCCUCCagCGUCGAggucgUCGACg -3' miRNA: 3'- -UGCuGCGGAGGa-GCAGCUaa---GGCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 4356 | 0.69 | 0.578306 |
Target: 5'- uCGccCGUCUCCUCGUCGcgcgUCCaACCg -3' miRNA: 3'- uGCu-GCGGAGGAGCAGCua--AGGcUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 14475 | 0.69 | 0.567674 |
Target: 5'- -aGGcCGCCUCCUgagCGUCGGcUCCuGCCu -3' miRNA: 3'- ugCU-GCGGAGGA---GCAGCUaAGGcUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 38782 | 0.68 | 0.62871 |
Target: 5'- -gGACGCCaUCgUCGUCGAgccggaacucgcuccCCGACUc -3' miRNA: 3'- ugCUGCGG-AGgAGCAGCUaa-------------GGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 36486 | 0.71 | 0.47405 |
Target: 5'- -gGACGCCgacaauuUCCUCGacgucgaacUCGAUgaggaggCCGACCg -3' miRNA: 3'- ugCUGCGG-------AGGAGC---------AGCUAa------GGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 37076 | 0.77 | 0.229078 |
Target: 5'- uCGAgGuCCUCCUCGUCaGUaCCGACCu -3' miRNA: 3'- uGCUgC-GGAGGAGCAGcUAaGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 13558 | 0.75 | 0.280202 |
Target: 5'- aGCGACGuCCUCCUggaaGUCGcgggccgaUCCGACCu -3' miRNA: 3'- -UGCUGC-GGAGGAg---CAGCua------AGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 1619 | 0.73 | 0.390573 |
Target: 5'- uCGAUGaaCUCCUCGagGAggCCGACCg -3' miRNA: 3'- uGCUGCg-GAGGAGCagCUaaGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 10123 | 0.72 | 0.425985 |
Target: 5'- uCGACGCaCUCCggguuccgcaguUCGUCGGUucccuccUCCGGCUc -3' miRNA: 3'- uGCUGCG-GAGG------------AGCAGCUA-------AGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 16637 | 0.71 | 0.484989 |
Target: 5'- gUGACGcCCUCgUCGUCGAcgUCGuCCg -3' miRNA: 3'- uGCUGC-GGAGgAGCAGCUaaGGCuGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 32355 | 0.71 | 0.495037 |
Target: 5'- uUGACGUCUCCUCGUacagCGGUgagaCGACg -3' miRNA: 3'- uGCUGCGGAGGAGCA----GCUAag--GCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 50268 | 0.7 | 0.515407 |
Target: 5'- gGCGGCGaggUCCUCGaCGucugCCGACCa -3' miRNA: 3'- -UGCUGCgg-AGGAGCaGCuaa-GGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 19674 | 0.7 | 0.536109 |
Target: 5'- gACG-UGCCUCCccUgGUCG-UUCUGGCCg -3' miRNA: 3'- -UGCuGCGGAGG--AgCAGCuAAGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 46731 | 0.71 | 0.459337 |
Target: 5'- cCGACGCCguguagacgucgcugUCCUCGccguagUCGucgCCGACCg -3' miRNA: 3'- uGCUGCGG---------------AGGAGC------AGCuaaGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 47037 | 0.69 | 0.610424 |
Target: 5'- gACGAUGCCggggagugCC-CGgacugCGGUUCUGACUg -3' miRNA: 3'- -UGCUGCGGa-------GGaGCa----GCUAAGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 5478 | 0.68 | 0.621177 |
Target: 5'- gACGACGCCgacggCCagaUCGUCGcagUCGACg -3' miRNA: 3'- -UGCUGCGGa----GG---AGCAGCuaaGGCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 39612 | 0.66 | 0.77712 |
Target: 5'- gACGugGCCggcgacgUCCUCGaCGAgu-CGAUCg -3' miRNA: 3'- -UGCugCGG-------AGGAGCaGCUaagGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 28135 | 0.66 | 0.778098 |
Target: 5'- aAUGACGuCCUCgUC-UCGAUacUUCGGCUg -3' miRNA: 3'- -UGCUGC-GGAGgAGcAGCUA--AGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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