Results 81 - 86 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 16688 | 0.67 | 0.717229 |
Target: 5'- aGCGGgGCCUCgaCGUUGG-UCgCGAUCg -3' miRNA: 3'- -UGCUgCGGAGgaGCAGCUaAG-GCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 56876 | 0.67 | 0.717229 |
Target: 5'- uCGACgGCCgugCCUCgGUCcAgaCCGACCg -3' miRNA: 3'- uGCUG-CGGa--GGAG-CAGcUaaGGCUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 58198 | 0.67 | 0.70674 |
Target: 5'- aACGACGaCUCCccCGcCGAUggCCGugCg -3' miRNA: 3'- -UGCUGCgGAGGa-GCaGCUAa-GGCugG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 54410 | 0.67 | 0.70674 |
Target: 5'- uCGACGCCUCaugUCuacCGAUUCCcACCc -3' miRNA: 3'- uGCUGCGGAGg--AGca-GCUAAGGcUGG- -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 3074 | 0.67 | 0.70674 |
Target: 5'- uCGACggGCCg-CUCGUCGAcgugcgUUCCGGCg -3' miRNA: 3'- uGCUG--CGGagGAGCAGCU------AAGGCUGg -5' |
|||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 16388 | 0.66 | 0.787799 |
Target: 5'- gACGAUGUCgaccgCCUCGcUCGcga-CGGCCa -3' miRNA: 3'- -UGCUGCGGa----GGAGC-AGCuaagGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home