miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 3' -53.9 NC_001347.2 + 166842 0.66 0.989212
Target:  5'- cGUGGCgaugucgaaGACGCAAUCGcgUACCGUc -3'
miRNA:   3'- uCACUGg--------UUGCGUUGGCuaGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 63243 0.66 0.989212
Target:  5'- --cGGCCucCGCGGCCGcugcgccCGCCGUGg -3'
miRNA:   3'- ucaCUGGuuGCGUUGGCua-----GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 85583 0.66 0.989212
Target:  5'- cGUG-CCGACGgGGucUCGcguUCACCGCGa -3'
miRNA:   3'- uCACuGGUUGCgUU--GGCu--AGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 155388 0.66 0.989212
Target:  5'- cGUGGguacucggauUCAugGCGAUCGG-CGCCGCu -3'
miRNA:   3'- uCACU----------GGUugCGUUGGCUaGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 71638 0.66 0.989212
Target:  5'- uGUGuaACCGcuACGCAuCCG-UgGCCGCGg -3'
miRNA:   3'- uCAC--UGGU--UGCGUuGGCuAgUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 136375 0.66 0.989078
Target:  5'- uAGUGgaauuuuACCGACGCAugCGcacUgACCGCc -3'
miRNA:   3'- -UCAC-------UGGUUGCGUugGCu--AgUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 148628 0.66 0.987811
Target:  5'- nGGUGGCCGGCgucagcguucGCAGCCcggCuCCGCGc -3'
miRNA:   3'- -UCACUGGUUG----------CGUUGGcuaGuGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 99595 0.66 0.987811
Target:  5'- cGGUGGaagaCAGCGCGuguCCGuUCGCCGa- -3'
miRNA:   3'- -UCACUg---GUUGCGUu--GGCuAGUGGCgc -5'
1626 3' -53.9 NC_001347.2 + 115043 0.66 0.987811
Target:  5'- --cGuCCGACGCGACgGuguuuUCGCCGuCGg -3'
miRNA:   3'- ucaCuGGUUGCGUUGgCu----AGUGGC-GC- -5'
1626 3' -53.9 NC_001347.2 + 38783 0.66 0.987811
Target:  5'- gGGUG-CCcACGCccAGCCGGUUGCaGCGg -3'
miRNA:   3'- -UCACuGGuUGCG--UUGGCUAGUGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 126129 0.66 0.986274
Target:  5'- --aGGCCGagACGCAACCGcUCuACCgGCa -3'
miRNA:   3'- ucaCUGGU--UGCGUUGGCuAG-UGG-CGc -5'
1626 3' -53.9 NC_001347.2 + 88186 0.66 0.986274
Target:  5'- --cGGCgGACGCAACgGGcguuugcgucCACCGCGg -3'
miRNA:   3'- ucaCUGgUUGCGUUGgCUa---------GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 208028 0.66 0.986274
Target:  5'- uGUGGgCGAUGgGACCGAcgucggagUCGCgGCGu -3'
miRNA:   3'- uCACUgGUUGCgUUGGCU--------AGUGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 166278 0.66 0.986274
Target:  5'- --cGGCUAGCGCG--CGuugCACCGCGg -3'
miRNA:   3'- ucaCUGGUUGCGUugGCua-GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 113533 0.66 0.986112
Target:  5'- --cGGCCAACGUAccgcgacGCCGAcccaCGCUGCa -3'
miRNA:   3'- ucaCUGGUUGCGU-------UGGCUa---GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 147303 0.66 0.984592
Target:  5'- --cGGCCAuuuACaacaAACCGAUUGCCGCGc -3'
miRNA:   3'- ucaCUGGU---UGcg--UUGGCUAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 154820 0.66 0.984592
Target:  5'- -aUGGCCAgcgGCGCGcACa-GUCGCCGCa -3'
miRNA:   3'- ucACUGGU---UGCGU-UGgcUAGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 101257 0.66 0.984592
Target:  5'- uGUGGCCAGCGgcGCCGGUUugCcCa -3'
miRNA:   3'- uCACUGGUUGCguUGGCUAGugGcGc -5'
1626 3' -53.9 NC_001347.2 + 38463 0.66 0.984592
Target:  5'- --cGGCCccgccGCGCAGCCcagcCACCGCGc -3'
miRNA:   3'- ucaCUGGu----UGCGUUGGcua-GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 76887 0.66 0.982758
Target:  5'- gAG-GAUCGcgcugagguucuGCGCGG-CGAUCACCGUGg -3'
miRNA:   3'- -UCaCUGGU------------UGCGUUgGCUAGUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.