Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 168813 | 0.66 | 0.982566 |
Target: 5'- cGGUGGCCAaacggccGCGCGACCcg--GCCGaCGa -3' miRNA: 3'- -UCACUGGU-------UGCGUUGGcuagUGGC-GC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 88186 | 0.66 | 0.986274 |
Target: 5'- --cGGCgGACGCAACgGGcguuugcgucCACCGCGg -3' miRNA: 3'- ucaCUGgUUGCGUUGgCUa---------GUGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 126129 | 0.66 | 0.986274 |
Target: 5'- --aGGCCGagACGCAACCGcUCuACCgGCa -3' miRNA: 3'- ucaCUGGU--UGCGUUGGCuAG-UGG-CGc -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 147303 | 0.66 | 0.984592 |
Target: 5'- --cGGCCAuuuACaacaAACCGAUUGCCGCGc -3' miRNA: 3'- ucaCUGGU---UGcg--UUGGCUAGUGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 113533 | 0.66 | 0.986112 |
Target: 5'- --cGGCCAACGUAccgcgacGCCGAcccaCGCUGCa -3' miRNA: 3'- ucaCUGGUUGCGU-------UGGCUa---GUGGCGc -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 154820 | 0.66 | 0.984592 |
Target: 5'- -aUGGCCAgcgGCGCGcACa-GUCGCCGCa -3' miRNA: 3'- ucACUGGU---UGCGU-UGgcUAGUGGCGc -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 101257 | 0.66 | 0.984592 |
Target: 5'- uGUGGCCAGCGgcGCCGGUUugCcCa -3' miRNA: 3'- uCACUGGUUGCguUGGCUAGugGcGc -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 38463 | 0.66 | 0.984592 |
Target: 5'- --cGGCCccgccGCGCAGCCcagcCACCGCGc -3' miRNA: 3'- ucaCUGGu----UGCGUUGGcua-GUGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 76887 | 0.66 | 0.982758 |
Target: 5'- gAG-GAUCGcgcugagguucuGCGCGG-CGAUCACCGUGg -3' miRNA: 3'- -UCaCUGGU------------UGCGUUgGCUAGUGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 208028 | 0.66 | 0.986274 |
Target: 5'- uGUGGgCGAUGgGACCGAcgucggagUCGCgGCGu -3' miRNA: 3'- uCACUgGUUGCgUUGGCU--------AGUGgCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 166278 | 0.66 | 0.986274 |
Target: 5'- --cGGCUAGCGCG--CGuugCACCGCGg -3' miRNA: 3'- ucaCUGGUUGCGUugGCua-GUGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 148628 | 0.66 | 0.987811 |
Target: 5'- nGGUGGCCGGCgucagcguucGCAGCCcggCuCCGCGc -3' miRNA: 3'- -UCACUGGUUG----------CGUUGGcuaGuGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 63243 | 0.66 | 0.989212 |
Target: 5'- --cGGCCucCGCGGCCGcugcgccCGCCGUGg -3' miRNA: 3'- ucaCUGGuuGCGUUGGCua-----GUGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 85583 | 0.66 | 0.989212 |
Target: 5'- cGUG-CCGACGgGGucUCGcguUCACCGCGa -3' miRNA: 3'- uCACuGGUUGCgUU--GGCu--AGUGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 155388 | 0.66 | 0.989212 |
Target: 5'- cGUGGguacucggauUCAugGCGAUCGG-CGCCGCu -3' miRNA: 3'- uCACU----------GGUugCGUUGGCUaGUGGCGc -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 71638 | 0.66 | 0.989212 |
Target: 5'- uGUGuaACCGcuACGCAuCCG-UgGCCGCGg -3' miRNA: 3'- uCAC--UGGU--UGCGUuGGCuAgUGGCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 136375 | 0.66 | 0.989078 |
Target: 5'- uAGUGgaauuuuACCGACGCAugCGcacUgACCGCc -3' miRNA: 3'- -UCAC-------UGGUUGCGUugGCu--AgUGGCGc -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 38783 | 0.66 | 0.987811 |
Target: 5'- gGGUG-CCcACGCccAGCCGGUUGCaGCGg -3' miRNA: 3'- -UCACuGGuUGCG--UUGGCUAGUGgCGC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 115043 | 0.66 | 0.987811 |
Target: 5'- --cGuCCGACGCGACgGuguuuUCGCCGuCGg -3' miRNA: 3'- ucaCuGGUUGCGUUGgCu----AGUGGC-GC- -5' |
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1626 | 3' | -53.9 | NC_001347.2 | + | 99595 | 0.66 | 0.987811 |
Target: 5'- cGGUGGaagaCAGCGCGuguCCGuUCGCCGa- -3' miRNA: 3'- -UCACUg---GUUGCGUu--GGCuAGUGGCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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