Results 21 - 40 of 102 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 155388 | 0.66 | 0.989212 |
Target: 5'- cGUGGguacucggauUCAugGCGAUCGG-CGCCGCu -3' miRNA: 3'- uCACU----------GGUugCGUUGGCUaGUGGCGc -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 71638 | 0.66 | 0.989212 |
Target: 5'- uGUGuaACCGcuACGCAuCCG-UgGCCGCGg -3' miRNA: 3'- uCAC--UGGU--UGCGUuGGCuAgUGGCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 136375 | 0.66 | 0.989078 |
Target: 5'- uAGUGgaauuuuACCGACGCAugCGcacUgACCGCc -3' miRNA: 3'- -UCAC-------UGGUUGCGUugGCu--AgUGGCGc -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 38783 | 0.66 | 0.987811 |
Target: 5'- gGGUG-CCcACGCccAGCCGGUUGCaGCGg -3' miRNA: 3'- -UCACuGGuUGCG--UUGGCUAGUGgCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 115043 | 0.66 | 0.987811 |
Target: 5'- --cGuCCGACGCGACgGuguuuUCGCCGuCGg -3' miRNA: 3'- ucaCuGGUUGCGUUGgCu----AGUGGC-GC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 126129 | 0.66 | 0.986274 |
Target: 5'- --aGGCCGagACGCAACCGcUCuACCgGCa -3' miRNA: 3'- ucaCUGGU--UGCGUUGGCuAG-UGG-CGc -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 88186 | 0.66 | 0.986274 |
Target: 5'- --cGGCgGACGCAACgGGcguuugcgucCACCGCGg -3' miRNA: 3'- ucaCUGgUUGCGUUGgCUa---------GUGGCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 208028 | 0.66 | 0.986274 |
Target: 5'- uGUGGgCGAUGgGACCGAcgucggagUCGCgGCGu -3' miRNA: 3'- uCACUgGUUGCgUUGGCU--------AGUGgCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 166278 | 0.66 | 0.986274 |
Target: 5'- --cGGCUAGCGCG--CGuugCACCGCGg -3' miRNA: 3'- ucaCUGGUUGCGUugGCua-GUGGCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 148628 | 0.66 | 0.987811 |
Target: 5'- nGGUGGCCGGCgucagcguucGCAGCCcggCuCCGCGc -3' miRNA: 3'- -UCACUGGUUG----------CGUUGGcuaGuGGCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 99595 | 0.66 | 0.987811 |
Target: 5'- cGGUGGaagaCAGCGCGuguCCGuUCGCCGa- -3' miRNA: 3'- -UCACUg---GUUGCGUu--GGCuAGUGGCgc -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 1927 | 0.67 | 0.97375 |
Target: 5'- cGGUGcuGCCcGCGCGgugGCUGggCugCGCGg -3' miRNA: 3'- -UCAC--UGGuUGCGU---UGGCuaGugGCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 147852 | 0.67 | 0.97375 |
Target: 5'- --cGACCucaugaGCGGCCuGggCGCCGCGg -3' miRNA: 3'- ucaCUGGuug---CGUUGG-CuaGUGGCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 65692 | 0.67 | 0.974779 |
Target: 5'- --cGACCAcgacacggugcugcuGCGCGACaCGGUgGCgGCGg -3' miRNA: 3'- ucaCUGGU---------------UGCGUUG-GCUAgUGgCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 37951 | 0.67 | 0.976267 |
Target: 5'- aGGUGcagcgcgucCCAGCGCGGCCGcuccCACUGCu -3' miRNA: 3'- -UCACu--------GGUUGCGUUGGCua--GUGGCGc -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 68751 | 0.67 | 0.976267 |
Target: 5'- gAGUG-CCGcCGCAGCCGGcagagCGCCGa- -3' miRNA: 3'- -UCACuGGUuGCGUUGGCUa----GUGGCgc -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 150150 | 0.67 | 0.978603 |
Target: 5'- cGUGGCUAAU---GCCGAggGCCGCGc -3' miRNA: 3'- uCACUGGUUGcguUGGCUagUGGCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 65336 | 0.67 | 0.978603 |
Target: 5'- uGGUGGCCAuACGCAACgaagccacgCGuaccaACCGCGc -3' miRNA: 3'- -UCACUGGU-UGCGUUG---------GCuag--UGGCGC- -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 87047 | 0.67 | 0.979488 |
Target: 5'- cGUGcCCAuGCGCAccucguccagaccgcGCCGGUCcaacaGCCGCa -3' miRNA: 3'- uCACuGGU-UGCGU---------------UGGCUAG-----UGGCGc -5' |
|||||||
1626 | 3' | -53.9 | NC_001347.2 | + | 197733 | 0.67 | 0.971044 |
Target: 5'- --cGACgCGACGCcgacGGCCaGGUCAuCCGCGa -3' miRNA: 3'- ucaCUG-GUUGCG----UUGG-CUAGU-GGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home