miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 3' -53.9 NC_001347.2 + 139900 1.09 0.007151
Target:  5'- uAGUGACCAACGCAACCGAUCACCGCGa -3'
miRNA:   3'- -UCACUGGUUGCGUUGGCUAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 157801 0.8 0.415928
Target:  5'- uGGUGucACCAACgGCAGCCGcgGUCGCCGCa -3'
miRNA:   3'- -UCAC--UGGUUG-CGUUGGC--UAGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 195211 0.79 0.478507
Target:  5'- --gGACUcgAGCGCAACCG-UCGCCGCGa -3'
miRNA:   3'- ucaCUGG--UUGCGUUGGCuAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 85328 0.77 0.545369
Target:  5'- uGGUGAUCAGCGCcGCCGccagcgccGUCGcCCGCGg -3'
miRNA:   3'- -UCACUGGUUGCGuUGGC--------UAGU-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 173430 0.77 0.555187
Target:  5'- cGUGGCCAGcCGCAACgGucuguUCGCCGUGg -3'
miRNA:   3'- uCACUGGUU-GCGUUGgCu----AGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 142619 0.75 0.665156
Target:  5'- --cGGCCaAACGCAGCCGGUUguaACCGCc -3'
miRNA:   3'- ucaCUGG-UUGCGUUGGCUAG---UGGCGc -5'
1626 3' -53.9 NC_001347.2 + 153279 0.75 0.675151
Target:  5'- -uUGGCCGACGUAgcGCCGuUCACCGuCGa -3'
miRNA:   3'- ucACUGGUUGCGU--UGGCuAGUGGC-GC- -5'
1626 3' -53.9 NC_001347.2 + 877 0.75 0.675151
Target:  5'- -aUGGcCCAGCGCAACgGcauGUCGCCGCGc -3'
miRNA:   3'- ucACU-GGUUGCGUUGgC---UAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 88617 0.74 0.714705
Target:  5'- cGGcGGCCuGCGCGGCCug-CACCGCGg -3'
miRNA:   3'- -UCaCUGGuUGCGUUGGcuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 4795 0.73 0.780973
Target:  5'- --gGACCAACGCGGCUGAcagCACgaGCGg -3'
miRNA:   3'- ucaCUGGUUGCGUUGGCUa--GUGg-CGC- -5'
1626 3' -53.9 NC_001347.2 + 63109 0.73 0.798878
Target:  5'- cGUGGCCGcCGCGGCCGc-CGCUGUGg -3'
miRNA:   3'- uCACUGGUuGCGUUGGCuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 124856 0.72 0.816202
Target:  5'- uGGUGACCAugGUcGgUGAcaUCACCGCc -3'
miRNA:   3'- -UCACUGGUugCGuUgGCU--AGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 1355 0.72 0.816202
Target:  5'- --gGACCuGCGuCAACUG-UCGCCGCGg -3'
miRNA:   3'- ucaCUGGuUGC-GUUGGCuAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 166521 0.72 0.84096
Target:  5'- --cGGCCAAC--AGCCGAUCGCgGCGa -3'
miRNA:   3'- ucaCUGGUUGcgUUGGCUAGUGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 155530 0.72 0.844141
Target:  5'- cGGUG-CCGACGCGACCgcugguGAUCGacgaggacgcggagcCCGCGg -3'
miRNA:   3'- -UCACuGGUUGCGUUGG------CUAGU---------------GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 125292 0.71 0.856562
Target:  5'- cGGUGGCgucagUGGCGCAACCGucgcaGCCGCGc -3'
miRNA:   3'- -UCACUG-----GUUGCGUUGGCuag--UGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 88341 0.71 0.856562
Target:  5'- ---aGCCGugGUAACCG-UCGCCGCu -3'
miRNA:   3'- ucacUGGUugCGUUGGCuAGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 156964 0.71 0.871382
Target:  5'- uGGUGGCgAGCGCGcuCCGGgcCAUCGCGa -3'
miRNA:   3'- -UCACUGgUUGCGUu-GGCUa-GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 9474 0.71 0.871382
Target:  5'- --cGACCuuuguGGCGCGACUGAgaCACCGCa -3'
miRNA:   3'- ucaCUGG-----UUGCGUUGGCUa-GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 197553 0.7 0.89205
Target:  5'- cGUGGCCGGCGUggcGGCCGAcggCAgCGUGc -3'
miRNA:   3'- uCACUGGUUGCG---UUGGCUa--GUgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.