miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 3' -53.9 NC_001347.2 + 273 0.7 0.904736
Target:  5'- uGUGGCCu-CGCGGCCGuuauuUCccCCGCGg -3'
miRNA:   3'- uCACUGGuuGCGUUGGCu----AGu-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 229752 0.7 0.904736
Target:  5'- uGUGGCCu-CGCGGCCGuuauuUCccCCGCGg -3'
miRNA:   3'- uCACUGGuuGCGUUGGCu----AGu-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 153247 0.7 0.910742
Target:  5'- cGUcGGCCGGCGaCGGCgGuUCGCCGUGg -3'
miRNA:   3'- uCA-CUGGUUGC-GUUGgCuAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 208345 0.7 0.910742
Target:  5'- aGGUGGCagagggagguCAGgGCcACCGAUC-CCGCGg -3'
miRNA:   3'- -UCACUG----------GUUgCGuUGGCUAGuGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 93995 0.7 0.910742
Target:  5'- cGUGGCCAACugguGCuGCCGGUCG-CGCu -3'
miRNA:   3'- uCACUGGUUG----CGuUGGCUAGUgGCGc -5'
1626 3' -53.9 NC_001347.2 + 81589 0.69 0.922068
Target:  5'- --cGAUCGcCGcCGGCCGGUCGCuCGCGa -3'
miRNA:   3'- ucaCUGGUuGC-GUUGGCUAGUG-GCGC- -5'
1626 3' -53.9 NC_001347.2 + 77869 0.69 0.922068
Target:  5'- aGGUGGCCGA-GCGcCUGggCGCCGUGc -3'
miRNA:   3'- -UCACUGGUUgCGUuGGCuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 130079 0.69 0.922068
Target:  5'- --aGACCuucuCGCAACCcaugCACCGCGc -3'
miRNA:   3'- ucaCUGGuu--GCGUUGGcua-GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 103153 0.69 0.927386
Target:  5'- uAGUGGCCGACcgGCAACCGuugaACC-CGg -3'
miRNA:   3'- -UCACUGGUUG--CGUUGGCuag-UGGcGC- -5'
1626 3' -53.9 NC_001347.2 + 20880 0.69 0.931975
Target:  5'- cGUGACCGACGUcGCUGGaaaugcaUCAgCUGCGu -3'
miRNA:   3'- uCACUGGUUGCGuUGGCU-------AGU-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 149431 0.69 0.932473
Target:  5'- uGUGcCCGACGaCAGCUcGUgGCCGCGc -3'
miRNA:   3'- uCACuGGUUGC-GUUGGcUAgUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 36774 0.69 0.932473
Target:  5'- cAGgGACaCGcgcuACGUAGCCGGUCgcggACCGCGg -3'
miRNA:   3'- -UCaCUG-GU----UGCGUUGGCUAG----UGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 59558 0.69 0.934444
Target:  5'- aAGUGGCgCAGCGCAcaGCCGAUgcuugUaacgaaggcgucaagGCCGCGu -3'
miRNA:   3'- -UCACUG-GUUGCGU--UGGCUA-----G---------------UGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 82559 0.69 0.93733
Target:  5'- ---aGCCGGCGguAgaCGGUCACCGCGc -3'
miRNA:   3'- ucacUGGUUGCguUg-GCUAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 91066 0.69 0.93733
Target:  5'- -aUGGCCuucUGCGGCCGc-CACCGCGa -3'
miRNA:   3'- ucACUGGuu-GCGUUGGCuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 222795 0.69 0.93733
Target:  5'- --cGGCCGAcaaauCGCAGCUGucuUCGCCGCc -3'
miRNA:   3'- ucaCUGGUU-----GCGUUGGCu--AGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 2083 0.69 0.93733
Target:  5'- uGUG-CCucCGCAGCCGuacggCGCCGCc -3'
miRNA:   3'- uCACuGGuuGCGUUGGCua---GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 103398 0.69 0.941506
Target:  5'- --cGACCGGCGUuucuccugaugccGGCCGc-CACCGCGg -3'
miRNA:   3'- ucaCUGGUUGCG-------------UUGGCuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 128450 0.69 0.945929
Target:  5'- cGUGGCCGucaagcgGCGCGACggCGcgCGCaCGCGg -3'
miRNA:   3'- uCACUGGU-------UGCGUUG--GCuaGUG-GCGC- -5'
1626 3' -53.9 NC_001347.2 + 26035 0.69 0.946359
Target:  5'- --aGACCuugcggauACGCcGCCGggCGCUGCGg -3'
miRNA:   3'- ucaCUGGu-------UGCGuUGGCuaGUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.