miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 3' -53.9 NC_001347.2 + 12002 0.66 0.982758
Target:  5'- -uUGG-CAGCGCGGCUG-UCACCGaCGg -3'
miRNA:   3'- ucACUgGUUGCGUUGGCuAGUGGC-GC- -5'
1626 3' -53.9 NC_001347.2 + 135339 0.66 0.982566
Target:  5'- --aGGCCAACGCccaggauaaggcgGACCGAgaGCCgGCGg -3'
miRNA:   3'- ucaCUGGUUGCG-------------UUGGCUagUGG-CGC- -5'
1626 3' -53.9 NC_001347.2 + 168813 0.66 0.982566
Target:  5'- cGGUGGCCAaacggccGCGCGACCcg--GCCGaCGa -3'
miRNA:   3'- -UCACUGGU-------UGCGUUGGcuagUGGC-GC- -5'
1626 3' -53.9 NC_001347.2 + 128222 0.66 0.980764
Target:  5'- cGUGAC--GCGUuAUCGA-CGCCGCGg -3'
miRNA:   3'- uCACUGguUGCGuUGGCUaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 85386 0.66 0.980764
Target:  5'- uAGUGAUCGugGCGuccCCG-UCGCUGUu -3'
miRNA:   3'- -UCACUGGUugCGUu--GGCuAGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 1251 0.66 0.980764
Target:  5'- aAGUGGuCgCAGCGCGACgCGGgcaCGCUGCu -3'
miRNA:   3'- -UCACU-G-GUUGCGUUG-GCUa--GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 148607 0.66 0.980764
Target:  5'- cGUGACCGGCG-GugCGGUCGCgGg- -3'
miRNA:   3'- uCACUGGUUGCgUugGCUAGUGgCgc -5'
1626 3' -53.9 NC_001347.2 + 177623 0.66 0.980764
Target:  5'- uGGUGGCC-GCGCucuuGGCCGA--GCCGgGg -3'
miRNA:   3'- -UCACUGGuUGCG----UUGGCUagUGGCgC- -5'
1626 3' -53.9 NC_001347.2 + 93367 0.66 0.980764
Target:  5'- cGUGACaCGugGCAGgCGAaaCGCUGUGg -3'
miRNA:   3'- uCACUG-GUugCGUUgGCUa-GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 131727 0.66 0.980764
Target:  5'- --cGACCGGcCGUcGCCGc-CGCCGCGg -3'
miRNA:   3'- ucaCUGGUU-GCGuUGGCuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 80894 0.66 0.980134
Target:  5'- gAGUGA-CGACGCAGCCcgcgcaacaagcgcCACCGCa -3'
miRNA:   3'- -UCACUgGUUGCGUUGGcua-----------GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 87047 0.67 0.979488
Target:  5'- cGUGcCCAuGCGCAccucguccagaccgcGCCGGUCcaacaGCCGCa -3'
miRNA:   3'- uCACuGGU-UGCGU---------------UGGCUAG-----UGGCGc -5'
1626 3' -53.9 NC_001347.2 + 150150 0.67 0.978603
Target:  5'- cGUGGCUAAU---GCCGAggGCCGCGc -3'
miRNA:   3'- uCACUGGUUGcguUGGCUagUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 65336 0.67 0.978603
Target:  5'- uGGUGGCCAuACGCAACgaagccacgCGuaccaACCGCGc -3'
miRNA:   3'- -UCACUGGU-UGCGUUG---------GCuag--UGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 110601 0.67 0.978603
Target:  5'- -cUGACCGuaACGCcgAACUGG-CGCCGCa -3'
miRNA:   3'- ucACUGGU--UGCG--UUGGCUaGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 68751 0.67 0.976267
Target:  5'- gAGUG-CCGcCGCAGCCGGcagagCGCCGa- -3'
miRNA:   3'- -UCACuGGUuGCGUUGGCUa----GUGGCgc -5'
1626 3' -53.9 NC_001347.2 + 37951 0.67 0.976267
Target:  5'- aGGUGcagcgcgucCCAGCGCGGCCGcuccCACUGCu -3'
miRNA:   3'- -UCACu--------GGUUGCGUUGGCua--GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 65692 0.67 0.974779
Target:  5'- --cGACCAcgacacggugcugcuGCGCGACaCGGUgGCgGCGg -3'
miRNA:   3'- ucaCUGGU---------------UGCGUUG-GCUAgUGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 147852 0.67 0.97375
Target:  5'- --cGACCucaugaGCGGCCuGggCGCCGCGg -3'
miRNA:   3'- ucaCUGGuug---CGUUGG-CuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 1927 0.67 0.97375
Target:  5'- cGGUGcuGCCcGCGCGgugGCUGggCugCGCGg -3'
miRNA:   3'- -UCAC--UGGuUGCGU---UGGCuaGugGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.