miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 3' -53.9 NC_001347.2 + 147852 0.67 0.97375
Target:  5'- --cGACCucaugaGCGGCCuGggCGCCGCGg -3'
miRNA:   3'- ucaCUGGuug---CGUUGG-CuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 197733 0.67 0.971044
Target:  5'- --cGACgCGACGCcgacGGCCaGGUCAuCCGCGa -3'
miRNA:   3'- ucaCUG-GUUGCG----UUGG-CUAGU-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 161120 0.67 0.970194
Target:  5'- uGGUGACgcgcgaagcauaggCGACGCAGgCGGUCGCgcauuaucagCGCGg -3'
miRNA:   3'- -UCACUG--------------GUUGCGUUgGCUAGUG----------GCGC- -5'
1626 3' -53.9 NC_001347.2 + 137578 0.67 0.968144
Target:  5'- cGUGACCAACaaAAgUGcUCACCGCc -3'
miRNA:   3'- uCACUGGUUGcgUUgGCuAGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 86057 0.67 0.967843
Target:  5'- uGGUGGCCGagaccguguccauACGCAacagaugccacACCGAgUugCGCGa -3'
miRNA:   3'- -UCACUGGU-------------UGCGU-----------UGGCUaGugGCGC- -5'
1626 3' -53.9 NC_001347.2 + 92262 0.68 0.966308
Target:  5'- cGUGGCCGccgccaugaggcGCGuCAuggaagggauaucgcACCGAUUGCCGCa -3'
miRNA:   3'- uCACUGGU------------UGC-GU---------------UGGCUAGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 1315 0.68 0.965043
Target:  5'- gGGUGACgCcGCGCAGCCaGAUgaACgGCGu -3'
miRNA:   3'- -UCACUG-GuUGCGUUGG-CUAg-UGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 115624 0.68 0.965043
Target:  5'- uAG-GACCAGaCGUGgucgcGCCGAUCGCUGUa -3'
miRNA:   3'- -UCaCUGGUU-GCGU-----UGGCUAGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 98952 0.68 0.965043
Target:  5'- aAGUGAUCGAuauuaacgUGCAGCCGGUacaCGCCcaGCGa -3'
miRNA:   3'- -UCACUGGUU--------GCGUUGGCUA---GUGG--CGC- -5'
1626 3' -53.9 NC_001347.2 + 17109 0.68 0.965043
Target:  5'- --cGGCC-GCGCcauGCCGGUCGuCCGCc -3'
miRNA:   3'- ucaCUGGuUGCGu--UGGCUAGU-GGCGc -5'
1626 3' -53.9 NC_001347.2 + 91698 0.68 0.961736
Target:  5'- cGUGAUCAGC---AUCGAcCACCGCGg -3'
miRNA:   3'- uCACUGGUUGcguUGGCUaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 168959 0.68 0.961394
Target:  5'- gAG-GGCCugguagaguucgaGGCGCAGCCGGgcgCGCUGCu -3'
miRNA:   3'- -UCaCUGG-------------UUGCGUUGGCUa--GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 107305 0.68 0.957122
Target:  5'- cGUGACCugcgaccgcaccgaGGCGcCAGCCGAcccaguggcguuUCGCCuGCGg -3'
miRNA:   3'- uCACUGG--------------UUGC-GUUGGCU------------AGUGG-CGC- -5'
1626 3' -53.9 NC_001347.2 + 20367 0.68 0.954486
Target:  5'- cGUGuCCGcgGCGUGACCacGUCACCGUGc -3'
miRNA:   3'- uCACuGGU--UGCGUUGGc-UAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 40452 0.68 0.954486
Target:  5'- uGUGuCCGACGCuGCCuGcgCACUGCc -3'
miRNA:   3'- uCACuGGUUGCGuUGG-CuaGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 174720 0.68 0.954486
Target:  5'- cAGgagGGCCuGCGCAACUacgCGCCGCu -3'
miRNA:   3'- -UCa--CUGGuUGCGUUGGcuaGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 88399 0.68 0.954486
Target:  5'- --gGGCCGACGCAGguucuccuuguCCGAa-GCCGCGu -3'
miRNA:   3'- ucaCUGGUUGCGUU-----------GGCUagUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 63889 0.68 0.953323
Target:  5'- cGGUGgaaACCAACGCGACCaccguuaccaguacCACCGCu -3'
miRNA:   3'- -UCAC---UGGUUGCGUUGGcua-----------GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 160635 0.68 0.950534
Target:  5'- --aGACUcaGGCGCAGCaCGGU-ACCGCGg -3'
miRNA:   3'- ucaCUGG--UUGCGUUG-GCUAgUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 38542 0.69 0.946359
Target:  5'- aGGUG-CCGACGCAcgGCCG-UCAgCaGCGa -3'
miRNA:   3'- -UCACuGGUUGCGU--UGGCuAGUgG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.