miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 3' -53.9 NC_001347.2 + 273 0.7 0.904736
Target:  5'- uGUGGCCu-CGCGGCCGuuauuUCccCCGCGg -3'
miRNA:   3'- uCACUGGuuGCGUUGGCu----AGu-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 877 0.75 0.675151
Target:  5'- -aUGGcCCAGCGCAACgGcauGUCGCCGCGc -3'
miRNA:   3'- ucACU-GGUUGCGUUGgC---UAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 1251 0.66 0.980764
Target:  5'- aAGUGGuCgCAGCGCGACgCGGgcaCGCUGCu -3'
miRNA:   3'- -UCACU-G-GUUGCGUUG-GCUa--GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 1315 0.68 0.965043
Target:  5'- gGGUGACgCcGCGCAGCCaGAUgaACgGCGu -3'
miRNA:   3'- -UCACUG-GuUGCGUUGG-CUAg-UGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 1355 0.72 0.816202
Target:  5'- --gGACCuGCGuCAACUG-UCGCCGCGg -3'
miRNA:   3'- ucaCUGGuUGC-GUUGGCuAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 1927 0.67 0.97375
Target:  5'- cGGUGcuGCCcGCGCGgugGCUGggCugCGCGg -3'
miRNA:   3'- -UCAC--UGGuUGCGU---UGGCuaGugGCGC- -5'
1626 3' -53.9 NC_001347.2 + 2083 0.69 0.93733
Target:  5'- uGUG-CCucCGCAGCCGuacggCGCCGCc -3'
miRNA:   3'- uCACuGGuuGCGUUGGCua---GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 4795 0.73 0.780973
Target:  5'- --gGACCAACGCGGCUGAcagCACgaGCGg -3'
miRNA:   3'- ucaCUGGUUGCGUUGGCUa--GUGg-CGC- -5'
1626 3' -53.9 NC_001347.2 + 9474 0.71 0.871382
Target:  5'- --cGACCuuuguGGCGCGACUGAgaCACCGCa -3'
miRNA:   3'- ucaCUGG-----UUGCGUUGGCUa-GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 12002 0.66 0.982758
Target:  5'- -uUGG-CAGCGCGGCUG-UCACCGaCGg -3'
miRNA:   3'- ucACUgGUUGCGUUGGCuAGUGGC-GC- -5'
1626 3' -53.9 NC_001347.2 + 17109 0.68 0.965043
Target:  5'- --cGGCC-GCGCcauGCCGGUCGuCCGCc -3'
miRNA:   3'- ucaCUGGuUGCGu--UGGCUAGU-GGCGc -5'
1626 3' -53.9 NC_001347.2 + 20367 0.68 0.954486
Target:  5'- cGUGuCCGcgGCGUGACCacGUCACCGUGc -3'
miRNA:   3'- uCACuGGU--UGCGUUGGc-UAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 20880 0.69 0.931975
Target:  5'- cGUGACCGACGUcGCUGGaaaugcaUCAgCUGCGu -3'
miRNA:   3'- uCACUGGUUGCGuUGGCU-------AGU-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 26035 0.69 0.946359
Target:  5'- --aGACCuugcggauACGCcGCCGggCGCUGCGg -3'
miRNA:   3'- ucaCUGGu-------UGCGuUGGCuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 36774 0.69 0.932473
Target:  5'- cAGgGACaCGcgcuACGUAGCCGGUCgcggACCGCGg -3'
miRNA:   3'- -UCaCUG-GU----UGCGUUGGCUAG----UGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 37951 0.67 0.976267
Target:  5'- aGGUGcagcgcgucCCAGCGCGGCCGcuccCACUGCu -3'
miRNA:   3'- -UCACu--------GGUUGCGUUGGCua--GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 38463 0.66 0.984592
Target:  5'- --cGGCCccgccGCGCAGCCcagcCACCGCGc -3'
miRNA:   3'- ucaCUGGu----UGCGUUGGcua-GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 38542 0.69 0.946359
Target:  5'- aGGUG-CCGACGCAcgGCCG-UCAgCaGCGa -3'
miRNA:   3'- -UCACuGGUUGCGU--UGGCuAGUgG-CGC- -5'
1626 3' -53.9 NC_001347.2 + 38783 0.66 0.987811
Target:  5'- gGGUG-CCcACGCccAGCCGGUUGCaGCGg -3'
miRNA:   3'- -UCACuGGuUGCG--UUGGCUAGUGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 40452 0.68 0.954486
Target:  5'- uGUGuCCGACGCuGCCuGcgCACUGCc -3'
miRNA:   3'- uCACuGGUUGCGuUGG-CuaGUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.