miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 3' -53.9 NC_001347.2 + 44360 0.69 0.946359
Target:  5'- --cGACCAGC-CGGCCGAUucgccCGCCGgGg -3'
miRNA:   3'- ucaCUGGUUGcGUUGGCUA-----GUGGCgC- -5'
1626 3' -53.9 NC_001347.2 + 59558 0.69 0.934444
Target:  5'- aAGUGGCgCAGCGCAcaGCCGAUgcuugUaacgaaggcgucaagGCCGCGu -3'
miRNA:   3'- -UCACUG-GUUGCGU--UGGCUA-----G---------------UGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 63109 0.73 0.798878
Target:  5'- cGUGGCCGcCGCGGCCGc-CGCUGUGg -3'
miRNA:   3'- uCACUGGUuGCGUUGGCuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 63243 0.66 0.989212
Target:  5'- --cGGCCucCGCGGCCGcugcgccCGCCGUGg -3'
miRNA:   3'- ucaCUGGuuGCGUUGGCua-----GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 63889 0.68 0.953323
Target:  5'- cGGUGgaaACCAACGCGACCaccguuaccaguacCACCGCu -3'
miRNA:   3'- -UCAC---UGGUUGCGUUGGcua-----------GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 65336 0.67 0.978603
Target:  5'- uGGUGGCCAuACGCAACgaagccacgCGuaccaACCGCGc -3'
miRNA:   3'- -UCACUGGU-UGCGUUG---------GCuag--UGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 65692 0.67 0.974779
Target:  5'- --cGACCAcgacacggugcugcuGCGCGACaCGGUgGCgGCGg -3'
miRNA:   3'- ucaCUGGU---------------UGCGUUG-GCUAgUGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 68751 0.67 0.976267
Target:  5'- gAGUG-CCGcCGCAGCCGGcagagCGCCGa- -3'
miRNA:   3'- -UCACuGGUuGCGUUGGCUa----GUGGCgc -5'
1626 3' -53.9 NC_001347.2 + 71638 0.66 0.989212
Target:  5'- uGUGuaACCGcuACGCAuCCG-UgGCCGCGg -3'
miRNA:   3'- uCAC--UGGU--UGCGUuGGCuAgUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 76887 0.66 0.982758
Target:  5'- gAG-GAUCGcgcugagguucuGCGCGG-CGAUCACCGUGg -3'
miRNA:   3'- -UCaCUGGU------------UGCGUUgGCUAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 77869 0.69 0.922068
Target:  5'- aGGUGGCCGA-GCGcCUGggCGCCGUGc -3'
miRNA:   3'- -UCACUGGUUgCGUuGGCuaGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 80894 0.66 0.980134
Target:  5'- gAGUGA-CGACGCAGCCcgcgcaacaagcgcCACCGCa -3'
miRNA:   3'- -UCACUgGUUGCGUUGGcua-----------GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 81589 0.69 0.922068
Target:  5'- --cGAUCGcCGcCGGCCGGUCGCuCGCGa -3'
miRNA:   3'- ucaCUGGUuGC-GUUGGCUAGUG-GCGC- -5'
1626 3' -53.9 NC_001347.2 + 82559 0.69 0.93733
Target:  5'- ---aGCCGGCGguAgaCGGUCACCGCGc -3'
miRNA:   3'- ucacUGGUUGCguUg-GCUAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 85328 0.77 0.545369
Target:  5'- uGGUGAUCAGCGCcGCCGccagcgccGUCGcCCGCGg -3'
miRNA:   3'- -UCACUGGUUGCGuUGGC--------UAGU-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 85386 0.66 0.980764
Target:  5'- uAGUGAUCGugGCGuccCCG-UCGCUGUu -3'
miRNA:   3'- -UCACUGGUugCGUu--GGCuAGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 85583 0.66 0.989212
Target:  5'- cGUG-CCGACGgGGucUCGcguUCACCGCGa -3'
miRNA:   3'- uCACuGGUUGCgUU--GGCu--AGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 86057 0.67 0.967843
Target:  5'- uGGUGGCCGagaccguguccauACGCAacagaugccacACCGAgUugCGCGa -3'
miRNA:   3'- -UCACUGGU-------------UGCGU-----------UGGCUaGugGCGC- -5'
1626 3' -53.9 NC_001347.2 + 87047 0.67 0.979488
Target:  5'- cGUGcCCAuGCGCAccucguccagaccgcGCCGGUCcaacaGCCGCa -3'
miRNA:   3'- uCACuGGU-UGCGU---------------UGGCUAG-----UGGCGc -5'
1626 3' -53.9 NC_001347.2 + 88186 0.66 0.986274
Target:  5'- --cGGCgGACGCAACgGGcguuugcgucCACCGCGg -3'
miRNA:   3'- ucaCUGgUUGCGUUGgCUa---------GUGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.