miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 3' -53.9 NC_001347.2 + 229752 0.7 0.904736
Target:  5'- uGUGGCCu-CGCGGCCGuuauuUCccCCGCGg -3'
miRNA:   3'- uCACUGGuuGCGUUGGCu----AGu-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 222795 0.69 0.93733
Target:  5'- --cGGCCGAcaaauCGCAGCUGucuUCGCCGCc -3'
miRNA:   3'- ucaCUGGUU-----GCGUUGGCu--AGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 208345 0.7 0.910742
Target:  5'- aGGUGGCagagggagguCAGgGCcACCGAUC-CCGCGg -3'
miRNA:   3'- -UCACUG----------GUUgCGuUGGCUAGuGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 208028 0.66 0.986274
Target:  5'- uGUGGgCGAUGgGACCGAcgucggagUCGCgGCGu -3'
miRNA:   3'- uCACUgGUUGCgUUGGCU--------AGUGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 197733 0.67 0.971044
Target:  5'- --cGACgCGACGCcgacGGCCaGGUCAuCCGCGa -3'
miRNA:   3'- ucaCUG-GUUGCG----UUGG-CUAGU-GGCGC- -5'
1626 3' -53.9 NC_001347.2 + 197553 0.7 0.89205
Target:  5'- cGUGGCCGGCGUggcGGCCGAcggCAgCGUGc -3'
miRNA:   3'- uCACUGGUUGCG---UUGGCUa--GUgGCGC- -5'
1626 3' -53.9 NC_001347.2 + 196399 0.67 0.97375
Target:  5'- --aGGCUggAGCGCAACCGA-CACCuggGCGc -3'
miRNA:   3'- ucaCUGG--UUGCGUUGGCUaGUGG---CGC- -5'
1626 3' -53.9 NC_001347.2 + 195211 0.79 0.478507
Target:  5'- --gGACUcgAGCGCAACCG-UCGCCGCGa -3'
miRNA:   3'- ucaCUGG--UUGCGUUGGCuAGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 177623 0.66 0.980764
Target:  5'- uGGUGGCC-GCGCucuuGGCCGA--GCCGgGg -3'
miRNA:   3'- -UCACUGGuUGCG----UUGGCUagUGGCgC- -5'
1626 3' -53.9 NC_001347.2 + 174720 0.68 0.954486
Target:  5'- cAGgagGGCCuGCGCAACUacgCGCCGCu -3'
miRNA:   3'- -UCa--CUGGuUGCGUUGGcuaGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 173430 0.77 0.555187
Target:  5'- cGUGGCCAGcCGCAACgGucuguUCGCCGUGg -3'
miRNA:   3'- uCACUGGUU-GCGUUGgCu----AGUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 168959 0.68 0.961394
Target:  5'- gAG-GGCCugguagaguucgaGGCGCAGCCGGgcgCGCUGCu -3'
miRNA:   3'- -UCaCUGG-------------UUGCGUUGGCUa--GUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 168813 0.66 0.982566
Target:  5'- cGGUGGCCAaacggccGCGCGACCcg--GCCGaCGa -3'
miRNA:   3'- -UCACUGGU-------UGCGUUGGcuagUGGC-GC- -5'
1626 3' -53.9 NC_001347.2 + 168440 0.69 0.946359
Target:  5'- cGUGGCCccguugugguagAACgGCAACCGGUCcucgucuccGCCGCc -3'
miRNA:   3'- uCACUGG------------UUG-CGUUGGCUAG---------UGGCGc -5'
1626 3' -53.9 NC_001347.2 + 166842 0.66 0.989212
Target:  5'- cGUGGCgaugucgaaGACGCAAUCGcgUACCGUc -3'
miRNA:   3'- uCACUGg--------UUGCGUUGGCuaGUGGCGc -5'
1626 3' -53.9 NC_001347.2 + 166521 0.72 0.84096
Target:  5'- --cGGCCAAC--AGCCGAUCGCgGCGa -3'
miRNA:   3'- ucaCUGGUUGcgUUGGCUAGUGgCGC- -5'
1626 3' -53.9 NC_001347.2 + 166278 0.66 0.986274
Target:  5'- --cGGCUAGCGCG--CGuugCACCGCGg -3'
miRNA:   3'- ucaCUGGUUGCGUugGCua-GUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 161120 0.67 0.970194
Target:  5'- uGGUGACgcgcgaagcauaggCGACGCAGgCGGUCGCgcauuaucagCGCGg -3'
miRNA:   3'- -UCACUG--------------GUUGCGUUgGCUAGUG----------GCGC- -5'
1626 3' -53.9 NC_001347.2 + 160635 0.68 0.950534
Target:  5'- --aGACUcaGGCGCAGCaCGGU-ACCGCGg -3'
miRNA:   3'- ucaCUGG--UUGCGUUG-GCUAgUGGCGC- -5'
1626 3' -53.9 NC_001347.2 + 157801 0.8 0.415928
Target:  5'- uGGUGucACCAACgGCAGCCGcgGUCGCCGCa -3'
miRNA:   3'- -UCAC--UGGUUG-CGUUGGC--UAGUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.