miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1626 5' -55.9 NC_001347.2 + 144583 0.66 0.959386
Target:  5'- gGCG-GC-GGCCGGGCUCGuggAGgagGCAa -3'
miRNA:   3'- gCGCgCGaCUGGCUCGAGU---UCaa-CGU- -5'
1626 5' -55.9 NC_001347.2 + 107100 0.66 0.951854
Target:  5'- -aCGCGCUGugCuGGCaUCGAGUggaagGCGg -3'
miRNA:   3'- gcGCGCGACugGcUCG-AGUUCAa----CGU- -5'
1626 5' -55.9 NC_001347.2 + 6862 0.66 0.943439
Target:  5'- gGCGUGCaGccGCCGAGCccgUCGAcGUUGCc -3'
miRNA:   3'- gCGCGCGaC--UGGCUCG---AGUU-CAACGu -5'
1626 5' -55.9 NC_001347.2 + 125029 0.66 0.938893
Target:  5'- gGCGgcUGCUGuuGCaCGGGCUCGGGUgacgGCGa -3'
miRNA:   3'- gCGC--GCGAC--UG-GCUCGAGUUCAa---CGU- -5'
1626 5' -55.9 NC_001347.2 + 162683 0.67 0.91842
Target:  5'- gGCGCGUUGAUCuaggcccaagaGcAGCUCGAGUgugGCc -3'
miRNA:   3'- gCGCGCGACUGG-----------C-UCGAGUUCAa--CGu -5'
1626 5' -55.9 NC_001347.2 + 173122 0.67 0.906808
Target:  5'- gGCGUGgUGGCCGAccuGCUUAAGUggaucggGCc -3'
miRNA:   3'- gCGCGCgACUGGCU---CGAGUUCAa------CGu -5'
1626 5' -55.9 NC_001347.2 + 184973 0.68 0.887703
Target:  5'- -uCGCGgaGACUGGGCUgCAGGcgGCAg -3'
miRNA:   3'- gcGCGCgaCUGGCUCGA-GUUCaaCGU- -5'
1626 5' -55.9 NC_001347.2 + 77516 0.68 0.873877
Target:  5'- gGCGCG-UGGCCGAggaGUggAAGUUGCAc -3'
miRNA:   3'- gCGCGCgACUGGCU---CGagUUCAACGU- -5'
1626 5' -55.9 NC_001347.2 + 2366 0.69 0.85922
Target:  5'- gGCGCGCUGgcGCUGGGacgCGAGUcgGCGc -3'
miRNA:   3'- gCGCGCGAC--UGGCUCga-GUUCAa-CGU- -5'
1626 5' -55.9 NC_001347.2 + 1936 0.69 0.851592
Target:  5'- cCGCGCGgUGGCUGGGCUgcgcggCGGGgccgGCGa -3'
miRNA:   3'- -GCGCGCgACUGGCUCGA------GUUCaa--CGU- -5'
1626 5' -55.9 NC_001347.2 + 43555 0.69 0.851592
Target:  5'- gGC-UGCUGACCGAcGCgUCAGGaugUGCAg -3'
miRNA:   3'- gCGcGCGACUGGCU-CG-AGUUCa--ACGU- -5'
1626 5' -55.9 NC_001347.2 + 93207 0.7 0.81072
Target:  5'- gCGCucGCGCUGGCgaCGAGCUCGcugAGcgGCAg -3'
miRNA:   3'- -GCG--CGCGACUG--GCUCGAGU---UCaaCGU- -5'
1626 5' -55.9 NC_001347.2 + 139665 0.72 0.708583
Target:  5'- gCGUGUGCUGAUCGAGg-CGGcGUUGCGg -3'
miRNA:   3'- -GCGCGCGACUGGCUCgaGUU-CAACGU- -5'
1626 5' -55.9 NC_001347.2 + 91212 0.73 0.648951
Target:  5'- gGaCGCGUUGACCGAGCUCuacc-GCGa -3'
miRNA:   3'- gC-GCGCGACUGGCUCGAGuucaaCGU- -5'
1626 5' -55.9 NC_001347.2 + 172054 0.74 0.55811
Target:  5'- gCGCGCGCUGggaagcgcugcgcGCCGAcauGCUCGAGUucggauUGCGc -3'
miRNA:   3'- -GCGCGCGAC-------------UGGCU---CGAGUUCA------ACGU- -5'
1626 5' -55.9 NC_001347.2 + 139934 1.09 0.00446
Target:  5'- cCGCGCGCUGACCGAGCUCAAGUUGCAu -3'
miRNA:   3'- -GCGCGCGACUGGCUCGAGUUCAACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.