Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1626 | 5' | -55.9 | NC_001347.2 | + | 1936 | 0.69 | 0.851592 |
Target: 5'- cCGCGCGgUGGCUGGGCUgcgcggCGGGgccgGCGa -3' miRNA: 3'- -GCGCGCgACUGGCUCGA------GUUCaa--CGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 2366 | 0.69 | 0.85922 |
Target: 5'- gGCGCGCUGgcGCUGGGacgCGAGUcgGCGc -3' miRNA: 3'- gCGCGCGAC--UGGCUCga-GUUCAa-CGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 6862 | 0.66 | 0.943439 |
Target: 5'- gGCGUGCaGccGCCGAGCccgUCGAcGUUGCc -3' miRNA: 3'- gCGCGCGaC--UGGCUCG---AGUU-CAACGu -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 43555 | 0.69 | 0.851592 |
Target: 5'- gGC-UGCUGACCGAcGCgUCAGGaugUGCAg -3' miRNA: 3'- gCGcGCGACUGGCU-CG-AGUUCa--ACGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 77516 | 0.68 | 0.873877 |
Target: 5'- gGCGCG-UGGCCGAggaGUggAAGUUGCAc -3' miRNA: 3'- gCGCGCgACUGGCU---CGagUUCAACGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 91212 | 0.73 | 0.648951 |
Target: 5'- gGaCGCGUUGACCGAGCUCuacc-GCGa -3' miRNA: 3'- gC-GCGCGACUGGCUCGAGuucaaCGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 93207 | 0.7 | 0.81072 |
Target: 5'- gCGCucGCGCUGGCgaCGAGCUCGcugAGcgGCAg -3' miRNA: 3'- -GCG--CGCGACUG--GCUCGAGU---UCaaCGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 107100 | 0.66 | 0.951854 |
Target: 5'- -aCGCGCUGugCuGGCaUCGAGUggaagGCGg -3' miRNA: 3'- gcGCGCGACugGcUCG-AGUUCAa----CGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 125029 | 0.66 | 0.938893 |
Target: 5'- gGCGgcUGCUGuuGCaCGGGCUCGGGUgacgGCGa -3' miRNA: 3'- gCGC--GCGAC--UG-GCUCGAGUUCAa---CGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 139665 | 0.72 | 0.708583 |
Target: 5'- gCGUGUGCUGAUCGAGg-CGGcGUUGCGg -3' miRNA: 3'- -GCGCGCGACUGGCUCgaGUU-CAACGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 139934 | 1.09 | 0.00446 |
Target: 5'- cCGCGCGCUGACCGAGCUCAAGUUGCAu -3' miRNA: 3'- -GCGCGCGACUGGCUCGAGUUCAACGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 144583 | 0.66 | 0.959386 |
Target: 5'- gGCG-GC-GGCCGGGCUCGuggAGgagGCAa -3' miRNA: 3'- gCGCgCGaCUGGCUCGAGU---UCaa-CGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 162683 | 0.67 | 0.91842 |
Target: 5'- gGCGCGUUGAUCuaggcccaagaGcAGCUCGAGUgugGCc -3' miRNA: 3'- gCGCGCGACUGG-----------C-UCGAGUUCAa--CGu -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 172054 | 0.74 | 0.55811 |
Target: 5'- gCGCGCGCUGggaagcgcugcgcGCCGAcauGCUCGAGUucggauUGCGc -3' miRNA: 3'- -GCGCGCGAC-------------UGGCU---CGAGUUCA------ACGU- -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 173122 | 0.67 | 0.906808 |
Target: 5'- gGCGUGgUGGCCGAccuGCUUAAGUggaucggGCc -3' miRNA: 3'- gCGCGCgACUGGCU---CGAGUUCAa------CGu -5' |
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1626 | 5' | -55.9 | NC_001347.2 | + | 184973 | 0.68 | 0.887703 |
Target: 5'- -uCGCGgaGACUGGGCUgCAGGcgGCAg -3' miRNA: 3'- gcGCGCgaCUGGCUCGA-GUUCaaCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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