miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16260 5' -56 NC_004084.1 + 17839 0.66 0.700371
Target:  5'- -cCGAGUUcgauggugaCCUCGUCGCCCGCa---- -3'
miRNA:   3'- caGCUCAA---------GGAGCGGUGGGUGauccu -5'
16260 5' -56 NC_004084.1 + 5012 0.66 0.689616
Target:  5'- -aCGAGgUCCUCgaggaguugguaGCCGCCCGacgAGGGc -3'
miRNA:   3'- caGCUCaAGGAG------------CGGUGGGUga-UCCU- -5'
16260 5' -56 NC_004084.1 + 46103 0.66 0.689616
Target:  5'- -cCGAcGUUCUUCGagaCCGuuucuCCCGCUGGGAg -3'
miRNA:   3'- caGCU-CAAGGAGC---GGU-----GGGUGAUCCU- -5'
16260 5' -56 NC_004084.1 + 29516 0.66 0.689616
Target:  5'- cUCGGGcacacccgCUUCGCCACCCGC-GGcGAg -3'
miRNA:   3'- cAGCUCaa------GGAGCGGUGGGUGaUC-CU- -5'
16260 5' -56 NC_004084.1 + 26084 0.66 0.667955
Target:  5'- cUCGuGcUCUUCGCCugC-GCUGGGAu -3'
miRNA:   3'- cAGCuCaAGGAGCGGugGgUGAUCCU- -5'
16260 5' -56 NC_004084.1 + 8355 0.66 0.667955
Target:  5'- uUCGAGagcaaUCGCCACCCGgUgaGGGAc -3'
miRNA:   3'- cAGCUCaagg-AGCGGUGGGUgA--UCCU- -5'
16260 5' -56 NC_004084.1 + 35143 0.66 0.667955
Target:  5'- cGUCGAGgUCCUCGggguaCAuCCCAaagAGGAc -3'
miRNA:   3'- -CAGCUCaAGGAGCg----GU-GGGUga-UCCU- -5'
16260 5' -56 NC_004084.1 + 22350 0.66 0.65707
Target:  5'- cGUCGcGgUCCUCGUCGuaucCCCACcAGGGu -3'
miRNA:   3'- -CAGCuCaAGGAGCGGU----GGGUGaUCCU- -5'
16260 5' -56 NC_004084.1 + 38692 0.67 0.634148
Target:  5'- -aCGAGgagUCCUCGCCACCaccguCguagucgaagucgUGGGAg -3'
miRNA:   3'- caGCUCa--AGGAGCGGUGGgu---G-------------AUCCU- -5'
16260 5' -56 NC_004084.1 + 35675 0.68 0.580781
Target:  5'- cGUCGAugUCCUCGUa--CCGCUGGGc -3'
miRNA:   3'- -CAGCUcaAGGAGCGgugGGUGAUCCu -5'
16260 5' -56 NC_004084.1 + 8646 0.68 0.565675
Target:  5'- -cCGAGgcuguagUCCUCGCCgagggucugggcgACCCACUcgagcaccucgaagAGGAg -3'
miRNA:   3'- caGCUCa------AGGAGCGG-------------UGGGUGA--------------UCCU- -5'
16260 5' -56 NC_004084.1 + 32623 0.69 0.516876
Target:  5'- cUCGAcgUCgCUCGCCACCUGgaGGGAu -3'
miRNA:   3'- cAGCUcaAG-GAGCGGUGGGUgaUCCU- -5'
16260 5' -56 NC_004084.1 + 47654 0.69 0.496179
Target:  5'- cGUCGAGgucggCgaCGCC-CCCACUGGcGAg -3'
miRNA:   3'- -CAGCUCaa---GgaGCGGuGGGUGAUC-CU- -5'
16260 5' -56 NC_004084.1 + 34278 0.69 0.496179
Target:  5'- uUCGAGgauagUCCUugcgcccggagaCGCCGCCCAaagagAGGAa -3'
miRNA:   3'- cAGCUCa----AGGA------------GCGGUGGGUga---UCCU- -5'
16260 5' -56 NC_004084.1 + 2214 0.72 0.355396
Target:  5'- aUCGAugUCCUCGCCGCUCGCUucGGc -3'
miRNA:   3'- cAGCUcaAGGAGCGGUGGGUGAu-CCu -5'
16260 5' -56 NC_004084.1 + 18806 0.73 0.322901
Target:  5'- cGUCGAGgaCgUCGCCGgCCACguccAGGAg -3'
miRNA:   3'- -CAGCUCaaGgAGCGGUgGGUGa---UCCU- -5'
16260 5' -56 NC_004084.1 + 8155 0.77 0.164873
Target:  5'- cGUCGAGgaCCUCGCCGCCaacgGCgacgAGGAc -3'
miRNA:   3'- -CAGCUCaaGGAGCGGUGGg---UGa---UCCU- -5'
16260 5' -56 NC_004084.1 + 53060 0.81 0.097407
Target:  5'- cGUCGAGaucgucccagUCCUCGCCGCCCGCUcGGc -3'
miRNA:   3'- -CAGCUCa---------AGGAGCGGUGGGUGAuCCu -5'
16260 5' -56 NC_004084.1 + 52897 1.09 0.000968
Target:  5'- gGUCGAGUUCCUCGCCACCCACUAGGAa -3'
miRNA:   3'- -CAGCUCAAGGAGCGGUGGGUGAUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.