miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16261 3' -58.2 NC_004084.1 + 54055 0.66 0.623112
Target:  5'- aCGgUUGGACGCgCGaCGaGGAgacGGGCGAg -3'
miRNA:   3'- -GCgGACCUGCG-GCaGC-CCUa--UCUGCU- -5'
16261 3' -58.2 NC_004084.1 + 6447 0.66 0.623112
Target:  5'- aCGCCcacUGGuCGCCGUggagCGGGAUguccuGGACc- -3'
miRNA:   3'- -GCGG---ACCuGCGGCA----GCCCUA-----UCUGcu -5'
16261 3' -58.2 NC_004084.1 + 38365 0.66 0.61249
Target:  5'- uGCCU--ACGCCGgaucgagcgCGGGA-AGGCGAc -3'
miRNA:   3'- gCGGAccUGCGGCa--------GCCCUaUCUGCU- -5'
16261 3' -58.2 NC_004084.1 + 58271 0.66 0.601884
Target:  5'- -aUCUGGAUgGCC-UCGGGGUGGGCc- -3'
miRNA:   3'- gcGGACCUG-CGGcAGCCCUAUCUGcu -5'
16261 3' -58.2 NC_004084.1 + 1130 0.66 0.601884
Target:  5'- gGuCCUGGAUGgCG-CGGuuGUAGACGAg -3'
miRNA:   3'- gC-GGACCUGCgGCaGCCc-UAUCUGCU- -5'
16261 3' -58.2 NC_004084.1 + 29072 0.66 0.591302
Target:  5'- cCGCCcgcucggGGGCGUCGUCGccgcGGUAGAUGc -3'
miRNA:   3'- -GCGGa------CCUGCGGCAGCc---CUAUCUGCu -5'
16261 3' -58.2 NC_004084.1 + 40915 0.66 0.581806
Target:  5'- gGCCUGGACGaggagcagcuacCGGGcUGGACGGa -3'
miRNA:   3'- gCGGACCUGCggca--------GCCCuAUCUGCU- -5'
16261 3' -58.2 NC_004084.1 + 39709 0.66 0.580752
Target:  5'- cCGCCaGugacggcgacGACGCCGUCGacgaGGAU-GACGAg -3'
miRNA:   3'- -GCGGaC----------CUGCGGCAGC----CCUAuCUGCU- -5'
16261 3' -58.2 NC_004084.1 + 6874 0.67 0.569194
Target:  5'- aGCCggucgUGGAUGCCGagguacgUCGGGAUc-GCGAc -3'
miRNA:   3'- gCGG-----ACCUGCGGC-------AGCCCUAucUGCU- -5'
16261 3' -58.2 NC_004084.1 + 23992 0.67 0.518534
Target:  5'- aGCgaUGGAUGCgGUUGGGGgcucccAGACGGc -3'
miRNA:   3'- gCGg-ACCUGCGgCAGCCCUa-----UCUGCU- -5'
16261 3' -58.2 NC_004084.1 + 11030 0.67 0.518534
Target:  5'- gCGcCCUGGAgcuCGCCGUCGacGAcgcGGACGAa -3'
miRNA:   3'- -GC-GGACCU---GCGGCAGCc-CUa--UCUGCU- -5'
16261 3' -58.2 NC_004084.1 + 52047 0.68 0.468787
Target:  5'- gGUCU--ACGgCGUCGGGAUGGACu- -3'
miRNA:   3'- gCGGAccUGCgGCAGCCCUAUCUGcu -5'
16261 3' -58.2 NC_004084.1 + 21075 0.74 0.200314
Target:  5'- uCGagCUGGGCGUCGUCGGGAUcGcCGAa -3'
miRNA:   3'- -GCg-GACCUGCGGCAGCCCUAuCuGCU- -5'
16261 3' -58.2 NC_004084.1 + 52475 1.09 0.000711
Target:  5'- uCGCCUGGACGCCGUCGGGAUAGACGAa -3'
miRNA:   3'- -GCGGACCUGCGGCAGCCCUAUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.