Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16263 | 3' | -57.5 | NC_004084.1 | + | 51422 | 0.68 | 0.519183 |
Target: 5'- gGCCUUCGAGGGCGaCa-CGCUGAu- -3' miRNA: 3'- aCGGAAGCUCUUGCaGggGCGGCUcu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 30437 | 0.68 | 0.519183 |
Target: 5'- aGCgauggCGAGGACGacgUCCCGCUGGGGa -3' miRNA: 3'- aCGgaa--GCUCUUGCa--GGGGCGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 41256 | 0.68 | 0.508937 |
Target: 5'- cGCCUUCGAcgucgccggcGAuCGUCCCCaucagugaaccGCCGAc- -3' miRNA: 3'- aCGGAAGCU----------CUuGCAGGGG-----------CGGCUcu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 20996 | 0.68 | 0.50283 |
Target: 5'- cGCCgcuaUCGAGAuccaaGCGUCCaucaucggccagcguCUGCCGAGu -3' miRNA: 3'- aCGGa---AGCUCU-----UGCAGG---------------GGCGGCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 18848 | 0.68 | 0.488708 |
Target: 5'- gGCUUUCGucGACgGUCCCgGUCGAGu -3' miRNA: 3'- aCGGAAGCucUUG-CAGGGgCGGCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 53340 | 0.69 | 0.459098 |
Target: 5'- cGUCUUCGAGGuggacuGCGUCgucuacUCCGCCGAc- -3' miRNA: 3'- aCGGAAGCUCU------UGCAG------GGGCGGCUcu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 27957 | 0.69 | 0.459098 |
Target: 5'- cGCC-UCGuagaGGAACGUCCCCaG-CGGGAc -3' miRNA: 3'- aCGGaAGC----UCUUGCAGGGG-CgGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 57811 | 0.69 | 0.449441 |
Target: 5'- aGCUUcaacgaucaacUCGAGGGCGUCCUCaCCGaAGAg -3' miRNA: 3'- aCGGA-----------AGCUCUUGCAGGGGcGGC-UCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 11231 | 0.69 | 0.424871 |
Target: 5'- gGCC-UCGAGAAgcCGUCCCggucagcaucccaguCGCCGuAGAg -3' miRNA: 3'- aCGGaAGCUCUU--GCAGGG---------------GCGGC-UCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 23125 | 0.7 | 0.393984 |
Target: 5'- cGUCgaaacgaUCGAGGACcUCCCCagcGCCGAGGa -3' miRNA: 3'- aCGGa------AGCUCUUGcAGGGG---CGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 57109 | 0.7 | 0.385181 |
Target: 5'- cGCCUcgauccagUCGAGGACGUCCUcgguguCGCCGu-- -3' miRNA: 3'- aCGGA--------AGCUCUUGCAGGG------GCGGCucu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 36243 | 0.7 | 0.385181 |
Target: 5'- cGCCUacCGGGucGACGUCCUcgagugCGCCGAGGc -3' miRNA: 3'- aCGGAa-GCUC--UUGCAGGG------GCGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 17818 | 0.7 | 0.367969 |
Target: 5'- aGCUUcacCGGGAAC-UCCUCGCCGAGu -3' miRNA: 3'- aCGGAa--GCUCUUGcAGGGGCGGCUCu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 39428 | 0.71 | 0.359563 |
Target: 5'- cGCCagCGGGAccuACGacuUCCCCGCCGGc- -3' miRNA: 3'- aCGGaaGCUCU---UGC---AGGGGCGGCUcu -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 5700 | 0.71 | 0.351292 |
Target: 5'- cGCUggguugagUUCGAGGACGUCgCUCggGCCGAGGu -3' miRNA: 3'- aCGG--------AAGCUCUUGCAG-GGG--CGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 15532 | 0.71 | 0.351292 |
Target: 5'- aGCUUUUGAGAGCuUCgCCUGCCG-GAg -3' miRNA: 3'- aCGGAAGCUCUUGcAG-GGGCGGCuCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 29073 | 0.71 | 0.327298 |
Target: 5'- cGCCcgcUCGGGGGCGUCgUCGCCGcGGu -3' miRNA: 3'- aCGGa--AGCUCUUGCAGgGGCGGCuCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 46107 | 0.72 | 0.319574 |
Target: 5'- cGuUCUUCGAGAcCGUuucUCCCGCUGGGAg -3' miRNA: 3'- aC-GGAAGCUCUuGCA---GGGGCGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 21134 | 0.73 | 0.269347 |
Target: 5'- gGCCUcccaGAGGACGUCCUggauUGUCGAGAg -3' miRNA: 3'- aCGGAag--CUCUUGCAGGG----GCGGCUCU- -5' |
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16263 | 3' | -57.5 | NC_004084.1 | + | 53434 | 0.73 | 0.262714 |
Target: 5'- aUGCC--CGAGuGgGUCCCCGCCGAu- -3' miRNA: 3'- -ACGGaaGCUCuUgCAGGGGCGGCUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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