miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16264 3' -57.4 NC_004084.1 + 3447 0.66 0.661896
Target:  5'- uGGUgaccugUCGGAUCGCGagcgcCGGGGGaauaCGGAa -3'
miRNA:   3'- gCCA------AGCCUAGCGCa----GCUCCUc---GCCU- -5'
16264 3' -57.4 NC_004084.1 + 45539 0.66 0.660835
Target:  5'- cCGGgaUGGGUUgGCG-CGAGGAccucgaaGCGGAg -3'
miRNA:   3'- -GCCaaGCCUAG-CGCaGCUCCU-------CGCCU- -5'
16264 3' -57.4 NC_004084.1 + 49895 0.66 0.651276
Target:  5'- aGG-UCGGGUacagCGCGUagaUGAGGuucuGCGGAu -3'
miRNA:   3'- gCCaAGCCUA----GCGCA---GCUCCu---CGCCU- -5'
16264 3' -57.4 NC_004084.1 + 19839 0.67 0.587522
Target:  5'- gCGGa--GGGUgacuucCGCGUCGAGG-GCGGu -3'
miRNA:   3'- -GCCaagCCUA------GCGCAGCUCCuCGCCu -5'
16264 3' -57.4 NC_004084.1 + 23374 0.68 0.535263
Target:  5'- -cGUUCGGAuccgUCGCGagccacUCGAGGA-CGGAc -3'
miRNA:   3'- gcCAAGCCU----AGCGC------AGCUCCUcGCCU- -5'
16264 3' -57.4 NC_004084.1 + 28104 0.69 0.474894
Target:  5'- aCGGUUCGGGgugCGCcUCGAcGAGCGc- -3'
miRNA:   3'- -GCCAAGCCUa--GCGcAGCUcCUCGCcu -5'
16264 3' -57.4 NC_004084.1 + 31151 0.7 0.436591
Target:  5'- gCGGUUCGGAcCGCGagaucUCGucGAGCGcGGu -3'
miRNA:   3'- -GCCAAGCCUaGCGC-----AGCucCUCGC-CU- -5'
16264 3' -57.4 NC_004084.1 + 30698 0.71 0.374091
Target:  5'- -aGUUCgagcaGGAgCGCGUCGAGGAGCuGAu -3'
miRNA:   3'- gcCAAG-----CCUaGCGCAGCUCCUCGcCU- -5'
16264 3' -57.4 NC_004084.1 + 8199 0.71 0.354103
Target:  5'- gGGUUcgCGGAUgGCGUCGAGGuugaaccaguaguGCGGc -3'
miRNA:   3'- gCCAA--GCCUAgCGCAGCUCCu------------CGCCu -5'
16264 3' -57.4 NC_004084.1 + 54055 0.72 0.317941
Target:  5'- aCGGUU-GGAcgCGCGaCGAGGAGaCGGGc -3'
miRNA:   3'- -GCCAAgCCUa-GCGCaGCUCCUC-GCCU- -5'
16264 3' -57.4 NC_004084.1 + 50530 1.09 0.000878
Target:  5'- uCGGUUCGGAUCGCGUCGAGGAGCGGAg -3'
miRNA:   3'- -GCCAAGCCUAGCGCAGCUCCUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.