miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16264 5' -54.9 NC_004084.1 + 51101 0.66 0.781479
Target:  5'- aGUCCucgagCagcgagaGGAGCUCGUCCaGGAGUa -3'
miRNA:   3'- aCAGGca---Gg------UCUUGAGCAGGgUCUCG- -5'
16264 5' -54.9 NC_004084.1 + 38659 0.66 0.781479
Target:  5'- -aUUCGUCgGGAGcCUCGguaguaCCCgAGAGCg -3'
miRNA:   3'- acAGGCAGgUCUU-GAGCa-----GGG-UCUCG- -5'
16264 5' -54.9 NC_004084.1 + 26373 0.66 0.761436
Target:  5'- aGUCgCGUUCGGGA-UCGUCgUAGAGg -3'
miRNA:   3'- aCAG-GCAGGUCUUgAGCAGgGUCUCg -5'
16264 5' -54.9 NC_004084.1 + 22593 0.66 0.761436
Target:  5'- cGUCUGggggggCCuucguGCUCGgCCCGGAGUa -3'
miRNA:   3'- aCAGGCa-----GGucu--UGAGCaGGGUCUCG- -5'
16264 5' -54.9 NC_004084.1 + 14743 0.66 0.74087
Target:  5'- cGUCCGUCgCAGGcACUCGgCgCGGuaGGCc -3'
miRNA:   3'- aCAGGCAG-GUCU-UGAGCaGgGUC--UCG- -5'
16264 5' -54.9 NC_004084.1 + 9391 0.67 0.709237
Target:  5'- cGUcCCGUCCAGGACgUCGUgUCGGu-- -3'
miRNA:   3'- aCA-GGCAGGUCUUG-AGCAgGGUCucg -5'
16264 5' -54.9 NC_004084.1 + 21818 0.67 0.709237
Target:  5'- -cUCCGUCCgcgguucacagAGAACUCG-CCaugCGGAGUa -3'
miRNA:   3'- acAGGCAGG-----------UCUUGAGCaGG---GUCUCG- -5'
16264 5' -54.9 NC_004084.1 + 29736 0.67 0.698528
Target:  5'- cGUCCGcCCAGuGCUCGaCgUuGAGCu -3'
miRNA:   3'- aCAGGCaGGUCuUGAGCaGgGuCUCG- -5'
16264 5' -54.9 NC_004084.1 + 53831 0.67 0.687756
Target:  5'- gUGUUCcUCCGGGaacgGCUCGaauccgaacucaUCCCGGAGUu -3'
miRNA:   3'- -ACAGGcAGGUCU----UGAGC------------AGGGUCUCG- -5'
16264 5' -54.9 NC_004084.1 + 36070 0.67 0.687756
Target:  5'- -uUCCGUCCGGuaguuCUCG-CCCucGAGUu -3'
miRNA:   3'- acAGGCAGGUCuu---GAGCaGGGu-CUCG- -5'
16264 5' -54.9 NC_004084.1 + 8282 0.68 0.633318
Target:  5'- gGUCgUGUgCGGAACUCGgcaUCCCGuuGGGCu -3'
miRNA:   3'- aCAG-GCAgGUCUUGAGC---AGGGU--CUCG- -5'
16264 5' -54.9 NC_004084.1 + 38842 0.68 0.622387
Target:  5'- cGUCCucgugGUCUGGGACgUCGUCCUcgucGAGCc -3'
miRNA:   3'- aCAGG-----CAGGUCUUG-AGCAGGGu---CUCG- -5'
16264 5' -54.9 NC_004084.1 + 51112 0.69 0.60056
Target:  5'- uUGUCCGUCuCGGAAUcgguguugUCGUCCUu--GCu -3'
miRNA:   3'- -ACAGGCAG-GUCUUG--------AGCAGGGucuCG- -5'
16264 5' -54.9 NC_004084.1 + 55092 0.69 0.557291
Target:  5'- --cCCGUCCgAGAcgcgcGCUCcUCCUGGAGCu -3'
miRNA:   3'- acaGGCAGG-UCU-----UGAGcAGGGUCUCG- -5'
16264 5' -54.9 NC_004084.1 + 45316 0.7 0.514959
Target:  5'- -cUCCGU-CAGAGC-CGUgCCGGAGUa -3'
miRNA:   3'- acAGGCAgGUCUUGaGCAgGGUCUCG- -5'
16264 5' -54.9 NC_004084.1 + 14001 0.71 0.47399
Target:  5'- cGUCCGUUCGGAACggGUUgCcGAGCc -3'
miRNA:   3'- aCAGGCAGGUCUUGagCAGgGuCUCG- -5'
16264 5' -54.9 NC_004084.1 + 11109 0.71 0.472986
Target:  5'- cG-CCGUUCGcGGCUCGaaggaugUCCCAGAGCc -3'
miRNA:   3'- aCaGGCAGGUcUUGAGC-------AGGGUCUCG- -5'
16264 5' -54.9 NC_004084.1 + 13742 0.71 0.464002
Target:  5'- cGUCUGUCCGGucgGCUCGcCCUcGAGg -3'
miRNA:   3'- aCAGGCAGGUCu--UGAGCaGGGuCUCg -5'
16264 5' -54.9 NC_004084.1 + 23159 0.72 0.397402
Target:  5'- cGUCCaucGUCCAuccuGgUCGUCCCAGAGg -3'
miRNA:   3'- aCAGG---CAGGUcu--UgAGCAGGGUCUCg -5'
16264 5' -54.9 NC_004084.1 + 29175 0.73 0.384836
Target:  5'- cGUUCGUCCAGcggaacucgcccuGCUCGgcgucgaugUUCCAGAGCg -3'
miRNA:   3'- aCAGGCAGGUCu------------UGAGC---------AGGGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.