miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 47384 0.71 0.769827
Target:  5'- gCGUCGUCGACGgcgaGCUCcAGGg--CGCg -3'
miRNA:   3'- -GCAGCAGCUGCa---UGAGcUUCaugGCG- -5'
16265 3' -50.9 NC_004084.1 + 30055 0.71 0.759616
Target:  5'- uCG-CGUCGuuGUGCcagccgUCGAGGcUGCCGCg -3'
miRNA:   3'- -GCaGCAGCugCAUG------AGCUUC-AUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 6341 0.71 0.749275
Target:  5'- aCGUCGgCGAUGUACgcgaCGAAGgGgCGCg -3'
miRNA:   3'- -GCAGCaGCUGCAUGa---GCUUCaUgGCG- -5'
16265 3' -50.9 NC_004084.1 + 55025 0.72 0.696005
Target:  5'- gCGUC-UCGuuGUGCUCGAGGagcuCCGCc -3'
miRNA:   3'- -GCAGcAGCugCAUGAGCUUCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 14339 0.72 0.706829
Target:  5'- cCGUCuucUCGAgGUACUgCGAGGUGCuaCGCg -3'
miRNA:   3'- -GCAGc--AGCUgCAUGA-GCUUCAUG--GCG- -5'
16265 3' -50.9 NC_004084.1 + 47895 0.72 0.706829
Target:  5'- -cUCGgcaacgCGACGgucGCUccgCGAGGUGCCGCg -3'
miRNA:   3'- gcAGCa-----GCUGCa--UGA---GCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 18849 0.72 0.717579
Target:  5'- -cUCGUCGACGagcUGCUCG-AGUAC-GCa -3'
miRNA:   3'- gcAGCAGCUGC---AUGAGCuUCAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 57414 0.72 0.685119
Target:  5'- aCGUCGcCGGCGaGCUCGAGGUggacaacaACCu- -3'
miRNA:   3'- -GCAGCaGCUGCaUGAGCUUCA--------UGGcg -5'
16265 3' -50.9 NC_004084.1 + 8817 0.72 0.706829
Target:  5'- cCGUCGaCGGCGaACUCGccAAGUACCu- -3'
miRNA:   3'- -GCAGCaGCUGCaUGAGC--UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 54137 0.73 0.663205
Target:  5'- aCGUCGUgGAcuuugaggauguCGUGCUCGuuucUGCCGCg -3'
miRNA:   3'- -GCAGCAgCU------------GCAUGAGCuuc-AUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 36216 0.73 0.61911
Target:  5'- gCGUCGU-GACGUuguGCUCGGAGaACuCGCc -3'
miRNA:   3'- -GCAGCAgCUGCA---UGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 7494 0.73 0.652198
Target:  5'- gGUCGUCGACG---UCGAGGccgauCCGCu -3'
miRNA:   3'- gCAGCAGCUGCaugAGCUUCau---GGCG- -5'
16265 3' -50.9 NC_004084.1 + 3359 0.74 0.606989
Target:  5'- gGUCGUCGACGUGCgUCGAcGGUguucuugGCCu- -3'
miRNA:   3'- gCAGCAGCUGCAUG-AGCU-UCA-------UGGcg -5'
16265 3' -50.9 NC_004084.1 + 46562 0.74 0.575192
Target:  5'- uCGUCGUCGGuCGUgaACUCGA--UAUCGCc -3'
miRNA:   3'- -GCAGCAGCU-GCA--UGAGCUucAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 31209 0.75 0.553481
Target:  5'- aCGUCGUCG-CGaacCUCGAGGUAC-GCa -3'
miRNA:   3'- -GCAGCAGCuGCau-GAGCUUCAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 2266 0.75 0.553481
Target:  5'- cCGUUGUUGAggagguaguCGUACUCGAGGgcAUCGCg -3'
miRNA:   3'- -GCAGCAGCU---------GCAUGAGCUUCa-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 8288 0.75 0.517177
Target:  5'- -cUCGUCauccgGACGaucgcgggccucgACUCGAAGUACCGCg -3'
miRNA:   3'- gcAGCAG-----CUGCa------------UGAGCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 4932 0.75 0.521402
Target:  5'- uCGcCGUCGACGUACUgGAugacGU-CCGCc -3'
miRNA:   3'- -GCaGCAGCUGCAUGAgCUu---CAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 580 0.76 0.469679
Target:  5'- uGUCGUCGAUGUGCUCuucGGUGaggaCGCc -3'
miRNA:   3'- gCAGCAGCUGCAUGAGcu-UCAUg---GCG- -5'
16265 3' -50.9 NC_004084.1 + 49814 0.76 0.479822
Target:  5'- uCGUCGUCGcCGcGCaUGAAGUACCGg -3'
miRNA:   3'- -GCAGCAGCuGCaUGaGCUUCAUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.