Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 29470 | 0.69 | 0.827705 |
Target: 5'- -cUCGUaGACGcGCUCGAGgGUGCgGCg -3' miRNA: 3'- gcAGCAgCUGCaUGAGCUU-CAUGgCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 9943 | 0.68 | 0.90009 |
Target: 5'- aCGUgCGUCGGCGgg-UCGGAGUaGCCa- -3' miRNA: 3'- -GCA-GCAGCUGCaugAGCUUCA-UGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 30157 | 0.68 | 0.885751 |
Target: 5'- aGUCGaagccgCGACGgugaACUacguaGGAGUACCGUu -3' miRNA: 3'- gCAGCa-----GCUGCa---UGAg----CUUCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 56280 | 0.68 | 0.87037 |
Target: 5'- aCGaCGUCGACcaccagguGUACuUCGAGG-ACUGCa -3' miRNA: 3'- -GCaGCAGCUG--------CAUG-AGCUUCaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 35358 | 0.68 | 0.885751 |
Target: 5'- gCGUCGcCGGCG-ACgaucgCGAAGUG-CGCc -3' miRNA: 3'- -GCAGCaGCUGCaUGa----GCUUCAUgGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 13768 | 0.68 | 0.87037 |
Target: 5'- gGUCGcgcUgGGCGgGCUCGGAG-AUCGCg -3' miRNA: 3'- gCAGC---AgCUGCaUGAGCUUCaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 19979 | 0.68 | 0.87037 |
Target: 5'- aCGaCGUCGACGUcgcgcguucGCUCG-AGU-UCGCg -3' miRNA: 3'- -GCaGCAGCUGCA---------UGAGCuUCAuGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 46764 | 0.68 | 0.878188 |
Target: 5'- aGUCGUCGcCGaccgACgUCGAcGUGCUGUa -3' miRNA: 3'- gCAGCAGCuGCa---UG-AGCUuCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 49067 | 0.68 | 0.884259 |
Target: 5'- uCGUgacCGUCGACGUGCgacggucgggaGAGGUcUCGCg -3' miRNA: 3'- -GCA---GCAGCUGCAUGag---------CUUCAuGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 19656 | 0.68 | 0.885751 |
Target: 5'- gGUCGUCGuGCGUcaUCGGAcGUGCCu- -3' miRNA: 3'- gCAGCAGC-UGCAugAGCUU-CAUGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 7695 | 0.68 | 0.885751 |
Target: 5'- aCGUCGUCG-UGaACUCGcggAAGUACCc- -3' miRNA: 3'- -GCAGCAGCuGCaUGAGC---UUCAUGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 38206 | 0.68 | 0.893053 |
Target: 5'- --aCGUCGACGUGCUUGc---GCCGg -3' miRNA: 3'- gcaGCAGCUGCAUGAGCuucaUGGCg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 31350 | 0.68 | 0.87037 |
Target: 5'- uCGUCGUCGACG---UCG-AGcAUCGCg -3' miRNA: 3'- -GCAGCAGCUGCaugAGCuUCaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 53253 | 0.67 | 0.909488 |
Target: 5'- gGUCGUCGACGgcgACgagaucgggccgggCGAcGUccuggcgaccaGCCGCg -3' miRNA: 3'- gCAGCAGCUGCa--UGa-------------GCUuCA-----------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 1484 | 0.67 | 0.91957 |
Target: 5'- gCGcCGaCGACG-ACUaCGAAGU-CCGCc -3' miRNA: 3'- -GCaGCaGCUGCaUGA-GCUUCAuGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 39340 | 0.67 | 0.925511 |
Target: 5'- uCGaCGUCGACGUAgaCG----GCCGCg -3' miRNA: 3'- -GCaGCAGCUGCAUgaGCuucaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 11094 | 0.67 | 0.920176 |
Target: 5'- gGUCGgCGACGagaucgccguucgcgGCUCGAAGgaugucccagaGCCGCu -3' miRNA: 3'- gCAGCaGCUGCa--------------UGAGCUUCa----------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 48346 | 0.67 | 0.91957 |
Target: 5'- uCGUCcUCGGCGUGCUcuacgacguaCGAucgACCGUg -3' miRNA: 3'- -GCAGcAGCUGCAUGA----------GCUucaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 2147 | 0.67 | 0.913351 |
Target: 5'- gGUgGUCGACGUcguACUCGuAGgcgacACCaGCa -3' miRNA: 3'- gCAgCAGCUGCA---UGAGCuUCa----UGG-CG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 18366 | 0.67 | 0.913351 |
Target: 5'- gCGggGUCGACG-GCUCGGAcGUGCaGCc -3' miRNA: 3'- -GCagCAGCUGCaUGAGCUU-CAUGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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