Results 81 - 100 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 39340 | 0.67 | 0.925511 |
Target: 5'- uCGaCGUCGACGUAgaCG----GCCGCg -3' miRNA: 3'- -GCaGCAGCUGCAUgaGCuucaUGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 1979 | 0.67 | 0.925511 |
Target: 5'- cCGUCGagaUCGuCGUuC-CGAcGGUGCCGCu -3' miRNA: 3'- -GCAGC---AGCuGCAuGaGCU-UCAUGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 1190 | 0.67 | 0.92781 |
Target: 5'- gGUCGUgGACGUagucgcguaagcGgUCGAAGUccuucgagauguuggACUGCg -3' miRNA: 3'- gCAGCAgCUGCA------------UgAGCUUCA---------------UGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 3920 | 0.67 | 0.931174 |
Target: 5'- aGUCGUCGaagGCGUcCUCGAaccggcuuuugaAGUGCaggguCGCg -3' miRNA: 3'- gCAGCAGC---UGCAuGAGCU------------UCAUG-----GCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 6688 | 0.67 | 0.931174 |
Target: 5'- -cUCGaCGACGUccauCUCGAGGUcaacGCCGg -3' miRNA: 3'- gcAGCaGCUGCAu---GAGCUUCA----UGGCg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 53495 | 0.67 | 0.930621 |
Target: 5'- aGUaCGUCGACGg---CGAAGUcgucgugcgguagACUGCg -3' miRNA: 3'- gCA-GCAGCUGCaugaGCUUCA-------------UGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 53155 | 0.67 | 0.931174 |
Target: 5'- aCGUCGUCGACGagGC-CGAug-ACUGa -3' miRNA: 3'- -GCAGCAGCUGCa-UGaGCUucaUGGCg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 21111 | 0.67 | 0.931174 |
Target: 5'- gCGUCGUCGAUGaGgUCGAAcGUgGCCu- -3' miRNA: 3'- -GCAGCAGCUGCaUgAGCUU-CA-UGGcg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 11147 | 0.67 | 0.906857 |
Target: 5'- aCGUCGUCGAC---CUCGuAGUaggcGCCGg -3' miRNA: 3'- -GCAGCAGCUGcauGAGCuUCA----UGGCg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 2147 | 0.67 | 0.913351 |
Target: 5'- gGUgGUCGACGUcguACUCGuAGgcgacACCaGCa -3' miRNA: 3'- gCAgCAGCUGCA---UGAGCuUCa----UGG-CG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 18366 | 0.67 | 0.913351 |
Target: 5'- gCGggGUCGACG-GCUCGGAcGUGCaGCc -3' miRNA: 3'- -GCagCAGCUGCaUGAGCUU-CAUGgCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 48346 | 0.67 | 0.91957 |
Target: 5'- uCGUCcUCGGCGUGCUcuacgacguaCGAucgACCGUg -3' miRNA: 3'- -GCAGcAGCUGCAUGA----------GCUucaUGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 46205 | 0.66 | 0.93656 |
Target: 5'- uCGUCGUCGGa-UGCgUCGAcgaucaucaucaGGUcGCCGCu -3' miRNA: 3'- -GCAGCAGCUgcAUG-AGCU------------UCA-UGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 55980 | 0.66 | 0.93656 |
Target: 5'- -cUCGUCGACGg--UCGAuucACCGCc -3' miRNA: 3'- gcAGCAGCUGCaugAGCUucaUGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 16532 | 0.66 | 0.93656 |
Target: 5'- gGUCGUCGugGaccucCUCGcAGU-UCGCg -3' miRNA: 3'- gCAGCAGCugCau---GAGCuUCAuGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 1145 | 0.66 | 0.941669 |
Target: 5'- gGUUGUaGACGaGCUCGGAG-ACCa- -3' miRNA: 3'- gCAGCAgCUGCaUGAGCUUCaUGGcg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 35139 | 0.66 | 0.941669 |
Target: 5'- uGggCGUCGAgGUcCUCGggGUACa-- -3' miRNA: 3'- gCa-GCAGCUgCAuGAGCuuCAUGgcg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 36818 | 0.66 | 0.951067 |
Target: 5'- aCGagCGUCGACGaACgccgaUCGAAcGaGCCGCg -3' miRNA: 3'- -GCa-GCAGCUGCaUG-----AGCUU-CaUGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 13135 | 0.66 | 0.936034 |
Target: 5'- gGcCGUCGuCGUACUCGAccuccuucgGGUACacacagaUGCg -3' miRNA: 3'- gCaGCAGCuGCAUGAGCU---------UCAUG-------GCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 37348 | 0.66 | 0.946504 |
Target: 5'- --cCGaCGACGcccaGCUCGAAGcACUGCg -3' miRNA: 3'- gcaGCaGCUGCa---UGAGCUUCaUGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home