miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 2350 0.69 0.862303
Target:  5'- aGUCGUCGuuccgcguCGUcCUCGAAGUcguagaacuugACCGg -3'
miRNA:   3'- gCAGCAGCu-------GCAuGAGCUUCA-----------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 31350 0.68 0.87037
Target:  5'- uCGUCGUCGACG---UCG-AGcAUCGCg -3'
miRNA:   3'- -GCAGCAGCUGCaugAGCuUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 56280 0.68 0.87037
Target:  5'- aCGaCGUCGACcaccagguGUACuUCGAGG-ACUGCa -3'
miRNA:   3'- -GCaGCAGCUG--------CAUG-AGCUUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 19979 0.68 0.87037
Target:  5'- aCGaCGUCGACGUcgcgcguucGCUCG-AGU-UCGCg -3'
miRNA:   3'- -GCaGCAGCUGCA---------UGAGCuUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 13768 0.68 0.87037
Target:  5'- gGUCGcgcUgGGCGgGCUCGGAG-AUCGCg -3'
miRNA:   3'- gCAGC---AgCUGCaUGAGCUUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 46764 0.68 0.878188
Target:  5'- aGUCGUCGcCGaccgACgUCGAcGUGCUGUa -3'
miRNA:   3'- gCAGCAGCuGCa---UG-AGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49067 0.68 0.884259
Target:  5'- uCGUgacCGUCGACGUGCgacggucgggaGAGGUcUCGCg -3'
miRNA:   3'- -GCA---GCAGCUGCAUGag---------CUUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 35358 0.68 0.885751
Target:  5'- gCGUCGcCGGCG-ACgaucgCGAAGUG-CGCc -3'
miRNA:   3'- -GCAGCaGCUGCaUGa----GCUUCAUgGCG- -5'
16265 3' -50.9 NC_004084.1 + 30157 0.68 0.885751
Target:  5'- aGUCGaagccgCGACGgugaACUacguaGGAGUACCGUu -3'
miRNA:   3'- gCAGCa-----GCUGCa---UGAg----CUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 7695 0.68 0.885751
Target:  5'- aCGUCGUCG-UGaACUCGcggAAGUACCc- -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGC---UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 19656 0.68 0.885751
Target:  5'- gGUCGUCGuGCGUcaUCGGAcGUGCCu- -3'
miRNA:   3'- gCAGCAGC-UGCAugAGCUU-CAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 38206 0.68 0.893053
Target:  5'- --aCGUCGACGUGCUUGc---GCCGg -3'
miRNA:   3'- gcaGCAGCUGCAUGAGCuucaUGGCg -5'
16265 3' -50.9 NC_004084.1 + 9943 0.68 0.90009
Target:  5'- aCGUgCGUCGGCGgg-UCGGAGUaGCCa- -3'
miRNA:   3'- -GCA-GCAGCUGCaugAGCUUCA-UGGcg -5'
16265 3' -50.9 NC_004084.1 + 11147 0.67 0.906857
Target:  5'- aCGUCGUCGAC---CUCGuAGUaggcGCCGg -3'
miRNA:   3'- -GCAGCAGCUGcauGAGCuUCA----UGGCg -5'
16265 3' -50.9 NC_004084.1 + 53253 0.67 0.909488
Target:  5'- gGUCGUCGACGgcgACgagaucgggccgggCGAcGUccuggcgaccaGCCGCg -3'
miRNA:   3'- gCAGCAGCUGCa--UGa-------------GCUuCA-----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 29724 0.67 0.912714
Target:  5'- gCGUCGUCuGGCcguccgcccaGUGCUCGAcGUugagcucGCUGCg -3'
miRNA:   3'- -GCAGCAG-CUG----------CAUGAGCUuCA-------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 37845 0.67 0.913351
Target:  5'- -uUCGUCGACGgccgAUUCGAAcuGgcCCGUc -3'
miRNA:   3'- gcAGCAGCUGCa---UGAGCUU--CauGGCG- -5'
16265 3' -50.9 NC_004084.1 + 2147 0.67 0.913351
Target:  5'- gGUgGUCGACGUcguACUCGuAGgcgacACCaGCa -3'
miRNA:   3'- gCAgCAGCUGCA---UGAGCuUCa----UGG-CG- -5'
16265 3' -50.9 NC_004084.1 + 18366 0.67 0.913351
Target:  5'- gCGggGUCGACG-GCUCGGAcGUGCaGCc -3'
miRNA:   3'- -GCagCAGCUGCaUGAGCUU-CAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 1484 0.67 0.91957
Target:  5'- gCGcCGaCGACG-ACUaCGAAGU-CCGCc -3'
miRNA:   3'- -GCaGCaGCUGCaUGA-GCUUCAuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.