miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 44944 0.66 0.959394
Target:  5'- aCGuUCGUCGACGagaacgGCguucgUCGcGAGUggACCGCa -3'
miRNA:   3'- -GC-AGCAGCUGCa-----UG-----AGC-UUCA--UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 45639 0.77 0.430254
Target:  5'- gGUCGUCGACGgcguCUCGGA-UGCCGa -3'
miRNA:   3'- gCAGCAGCUGCau--GAGCUUcAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 46205 0.66 0.93656
Target:  5'- uCGUCGUCGGa-UGCgUCGAcgaucaucaucaGGUcGCCGCu -3'
miRNA:   3'- -GCAGCAGCUgcAUG-AGCU------------UCA-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 46302 0.69 0.845454
Target:  5'- aGUCGUCGACGUugACUCc--GU-UCGCg -3'
miRNA:   3'- gCAGCAGCUGCA--UGAGcuuCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 46419 0.67 0.931174
Target:  5'- aGUUGUUGACGUcgcuggggaACUCGucGAGUugacuccaguCCGCg -3'
miRNA:   3'- gCAGCAGCUGCA---------UGAGC--UUCAu---------GGCG- -5'
16265 3' -50.9 NC_004084.1 + 46562 0.74 0.575192
Target:  5'- uCGUCGUCGGuCGUgaACUCGA--UAUCGCc -3'
miRNA:   3'- -GCAGCAGCU-GCA--UGAGCUucAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 46764 0.68 0.878188
Target:  5'- aGUCGUCGcCGaccgACgUCGAcGUGCUGUa -3'
miRNA:   3'- gCAGCAGCuGCa---UG-AGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 47384 0.71 0.769827
Target:  5'- gCGUCGUCGACGgcgaGCUCcAGGg--CGCg -3'
miRNA:   3'- -GCAGCAGCUGCa---UGAGcUUCaugGCG- -5'
16265 3' -50.9 NC_004084.1 + 47895 0.72 0.706829
Target:  5'- -cUCGgcaacgCGACGgucGCUccgCGAGGUGCCGCg -3'
miRNA:   3'- gcAGCa-----GCUGCa--UGA---GCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 48346 0.67 0.91957
Target:  5'- uCGUCcUCGGCGUGCUcuacgacguaCGAucgACCGUg -3'
miRNA:   3'- -GCAGcAGCUGCAUGA----------GCUucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 48429 0.7 0.799557
Target:  5'- -uUCGUCGACGUcgUCGGccAGUACgGUg -3'
miRNA:   3'- gcAGCAGCUGCAugAGCU--UCAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 48680 0.7 0.778894
Target:  5'- gGUCG-CGACGUGggagaucCUCGAA--GCCGCc -3'
miRNA:   3'- gCAGCaGCUGCAU-------GAGCUUcaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 48784 0.69 0.827705
Target:  5'- uGUCGgacgagaugcccUCGGCGUugaucGCUCGAAG-ACgCGCa -3'
miRNA:   3'- gCAGC------------AGCUGCA-----UGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 49067 0.68 0.884259
Target:  5'- uCGUgacCGUCGACGUGCgacggucgggaGAGGUcUCGCg -3'
miRNA:   3'- -GCA---GCAGCUGCAUGag---------CUUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49323 0.7 0.799557
Target:  5'- -cUCGUCGACaucGCccggUCGgcGUACCGCg -3'
miRNA:   3'- gcAGCAGCUGca-UG----AGCuuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49404 0.69 0.836687
Target:  5'- aGUCGUCGugGUcCUCGA---ACCa- -3'
miRNA:   3'- gCAGCAGCugCAuGAGCUucaUGGcg -5'
16265 3' -50.9 NC_004084.1 + 49559 1.13 0.002322
Target:  5'- cCGUCGUCGACGUACUCGAAGUACCGCu -3'
miRNA:   3'- -GCAGCAGCUGCAUGAGCUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49589 0.71 0.749275
Target:  5'- uCGUCGaCGAgGUACUUGGcgAGUucGCCGUc -3'
miRNA:   3'- -GCAGCaGCUgCAUGAGCU--UCA--UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 49814 0.76 0.479822
Target:  5'- uCGUCGUCGcCGcGCaUGAAGUACCGg -3'
miRNA:   3'- -GCAGCAGCuGCaUGaGCUUCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 52851 0.71 0.769827
Target:  5'- gCGgcaGUUGACGaucUGCUCGAgcGGUGCCGa -3'
miRNA:   3'- -GCag-CAGCUGC---AUGAGCU--UCAUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.