miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 28785 0.77 0.430254
Target:  5'- gGUCGUCGACGUccggaGC-CGAcagccaGGUGCCGUu -3'
miRNA:   3'- gCAGCAGCUGCA-----UGaGCU------UCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 28022 0.66 0.941669
Target:  5'- uCGUCGUCGAaaagccCGUGCagGcGGUugUGUg -3'
miRNA:   3'- -GCAGCAGCU------GCAUGagCuUCAugGCG- -5'
16265 3' -50.9 NC_004084.1 + 27790 0.69 0.853995
Target:  5'- gCGUCGUCG-CGaACUCGuAGU-CgGCg -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGCuUCAuGgCG- -5'
16265 3' -50.9 NC_004084.1 + 26014 0.66 0.953676
Target:  5'- -cUCGUCGACGggaccgaacgcggACUCGAucgagcGGaGCUGCu -3'
miRNA:   3'- gcAGCAGCUGCa------------UGAGCU------UCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 25168 0.66 0.943636
Target:  5'- aCGUCcUCGACGUccucaucgaACUCGuAGGggacggcccgcucgGCCGCc -3'
miRNA:   3'- -GCAGcAGCUGCA---------UGAGC-UUCa-------------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 23036 0.7 0.809129
Target:  5'- gGUCGUCGACGUGauCUUGgcGcacuUCGCg -3'
miRNA:   3'- gCAGCAGCUGCAU--GAGCuuCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 21111 0.67 0.931174
Target:  5'- gCGUCGUCGAUGaGgUCGAAcGUgGCCu- -3'
miRNA:   3'- -GCAGCAGCUGCaUgAGCUU-CA-UGGcg -5'
16265 3' -50.9 NC_004084.1 + 19979 0.68 0.87037
Target:  5'- aCGaCGUCGACGUcgcgcguucGCUCG-AGU-UCGCg -3'
miRNA:   3'- -GCaGCAGCUGCA---------UGAGCuUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 19656 0.68 0.885751
Target:  5'- gGUCGUCGuGCGUcaUCGGAcGUGCCu- -3'
miRNA:   3'- gCAGCAGC-UGCAugAGCUU-CAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 18849 0.72 0.717579
Target:  5'- -cUCGUCGACGagcUGCUCG-AGUAC-GCa -3'
miRNA:   3'- gcAGCAGCUGC---AUGAGCuUCAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 18540 0.7 0.822215
Target:  5'- gGUCGauaccgcacugcagcUCaGCGUGCUCGAcGGcGCCGCg -3'
miRNA:   3'- gCAGC---------------AGcUGCAUGAGCU-UCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 18366 0.67 0.913351
Target:  5'- gCGggGUCGACG-GCUCGGAcGUGCaGCc -3'
miRNA:   3'- -GCagCAGCUGCaUGAGCUU-CAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 18051 0.66 0.955362
Target:  5'- --aUGUCGGCGgcUUUGA--UGCCGCg -3'
miRNA:   3'- gcaGCAGCUGCauGAGCUucAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 17350 0.86 0.128371
Target:  5'- -cUCGUCGACGUACUCGcGG-ACCGCu -3'
miRNA:   3'- gcAGCAGCUGCAUGAGCuUCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 16820 0.71 0.769827
Target:  5'- uCGUCcUCGACGUAgUCGAcGaucuCCGCu -3'
miRNA:   3'- -GCAGcAGCUGCAUgAGCUuCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 16646 0.69 0.853151
Target:  5'- uCGUCGUCGACGUcgUCcggGAGGUccucgucGCCGg -3'
miRNA:   3'- -GCAGCAGCUGCAugAG---CUUCA-------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 16532 0.66 0.93656
Target:  5'- gGUCGUCGugGaccucCUCGcAGU-UCGCg -3'
miRNA:   3'- gCAGCAGCugCau---GAGCuUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 15031 0.78 0.392841
Target:  5'- aG-CGUCGACGgccACUCGAGGUGgUGCu -3'
miRNA:   3'- gCaGCAGCUGCa--UGAGCUUCAUgGCG- -5'
16265 3' -50.9 NC_004084.1 + 14339 0.72 0.706829
Target:  5'- cCGUCuucUCGAgGUACUgCGAGGUGCuaCGCg -3'
miRNA:   3'- -GCAGc--AGCUgCAUGA-GCUUCAUG--GCG- -5'
16265 3' -50.9 NC_004084.1 + 13768 0.68 0.87037
Target:  5'- gGUCGcgcUgGGCGgGCUCGGAG-AUCGCg -3'
miRNA:   3'- gCAGC---AgCUGCaUGAGCUUCaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.