Results 81 - 100 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 13135 | 0.66 | 0.936034 |
Target: 5'- gGcCGUCGuCGUACUCGAccuccuucgGGUACacacagaUGCg -3' miRNA: 3'- gCaGCAGCuGCAUGAGCU---------UCAUG-------GCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 12858 | 0.71 | 0.738814 |
Target: 5'- --cCGUCGGCGUACuccgcuUCGAGGUcCuCGCg -3' miRNA: 3'- gcaGCAGCUGCAUG------AGCUUCAuG-GCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 11729 | 0.78 | 0.383823 |
Target: 5'- aCGUCGccggCGACGUGCUCGA---AUCGCg -3' miRNA: 3'- -GCAGCa---GCUGCAUGAGCUucaUGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 11406 | 0.7 | 0.799557 |
Target: 5'- uCGaUCG-CGACGUcCUCGAGGaACuCGCg -3' miRNA: 3'- -GC-AGCaGCUGCAuGAGCUUCaUG-GCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 11147 | 0.67 | 0.906857 |
Target: 5'- aCGUCGUCGAC---CUCGuAGUaggcGCCGg -3' miRNA: 3'- -GCAGCAGCUGcauGAGCuUCA----UGGCg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 11094 | 0.67 | 0.920176 |
Target: 5'- gGUCGgCGACGagaucgccguucgcgGCUCGAAGgaugucccagaGCCGCu -3' miRNA: 3'- gCAGCaGCUGCa--------------UGAGCUUCa----------UGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 11042 | 0.71 | 0.738814 |
Target: 5'- uCGcCGUCGACG-ACgcggaCGAAGgggcgGCCGCc -3' miRNA: 3'- -GCaGCAGCUGCaUGa----GCUUCa----UGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 9943 | 0.68 | 0.90009 |
Target: 5'- aCGUgCGUCGGCGgg-UCGGAGUaGCCa- -3' miRNA: 3'- -GCA-GCAGCUGCaugAGCUUCA-UGGcg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 8817 | 0.72 | 0.706829 |
Target: 5'- cCGUCGaCGGCGaACUCGccAAGUACCu- -3' miRNA: 3'- -GCAGCaGCUGCaUGAGC--UUCAUGGcg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 8288 | 0.75 | 0.517177 |
Target: 5'- -cUCGUCauccgGACGaucgcgggccucgACUCGAAGUACCGCg -3' miRNA: 3'- gcAGCAG-----CUGCa------------UGAGCUUCAUGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 7695 | 0.68 | 0.885751 |
Target: 5'- aCGUCGUCG-UGaACUCGcggAAGUACCc- -3' miRNA: 3'- -GCAGCAGCuGCaUGAGC---UUCAUGGcg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 7494 | 0.73 | 0.652198 |
Target: 5'- gGUCGUCGACG---UCGAGGccgauCCGCu -3' miRNA: 3'- gCAGCAGCUGCaugAGCUUCau---GGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 6688 | 0.67 | 0.931174 |
Target: 5'- -cUCGaCGACGUccauCUCGAGGUcaacGCCGg -3' miRNA: 3'- gcAGCaGCUGCAu---GAGCUUCA----UGGCg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 6341 | 0.71 | 0.749275 |
Target: 5'- aCGUCGgCGAUGUACgcgaCGAAGgGgCGCg -3' miRNA: 3'- -GCAGCaGCUGCAUGa---GCUUCaUgGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 6259 | 0.69 | 0.836687 |
Target: 5'- -uUCGUCGACGUGgUCGgcGU-CCa- -3' miRNA: 3'- gcAGCAGCUGCAUgAGCuuCAuGGcg -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 5563 | 0.78 | 0.392841 |
Target: 5'- ---aGUCGACGUugUCGAGGUcGCCaGCg -3' miRNA: 3'- gcagCAGCUGCAugAGCUUCA-UGG-CG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 5191 | 0.69 | 0.853995 |
Target: 5'- cCGcUCGUagaugacaCGACGgugcgACUCGAcGUGCUGCu -3' miRNA: 3'- -GC-AGCA--------GCUGCa----UGAGCUuCAUGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 4932 | 0.75 | 0.521402 |
Target: 5'- uCGcCGUCGACGUACUgGAugacGU-CCGCc -3' miRNA: 3'- -GCaGCAGCUGCAUGAgCUu---CAuGGCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 3920 | 0.67 | 0.931174 |
Target: 5'- aGUCGUCGaagGCGUcCUCGAaccggcuuuugaAGUGCaggguCGCg -3' miRNA: 3'- gCAGCAGC---UGCAuGAGCU------------UCAUG-----GCG- -5' |
|||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 3359 | 0.74 | 0.606989 |
Target: 5'- gGUCGUCGACGUGCgUCGAcGGUguucuugGCCu- -3' miRNA: 3'- gCAGCAGCUGCAUG-AGCU-UCA-------UGGcg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home