miRNA display CGI


Results 81 - 100 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 37050 0.66 0.959002
Target:  5'- gGUCGUCGAUGUcgAUguucucggugUCGAgguccuccucgucAGUACCGa -3'
miRNA:   3'- gCAGCAGCUGCA--UG----------AGCU-------------UCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 33261 0.66 0.959394
Target:  5'- aCGUCGagGACGUcgucaGCUCGuucuucGAGUACUa- -3'
miRNA:   3'- -GCAGCagCUGCA-----UGAGC------UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 35422 0.66 0.959394
Target:  5'- uCGUCGUCGAUcucGCUCGcGAGgucgACCa- -3'
miRNA:   3'- -GCAGCAGCUGca-UGAGC-UUCa---UGGcg -5'
16265 3' -50.9 NC_004084.1 + 6688 0.67 0.931174
Target:  5'- -cUCGaCGACGUccauCUCGAGGUcaacGCCGg -3'
miRNA:   3'- gcAGCaGCUGCAu---GAGCUUCA----UGGCg -5'
16265 3' -50.9 NC_004084.1 + 46419 0.67 0.931174
Target:  5'- aGUUGUUGACGUcgcuggggaACUCGucGAGUugacuccaguCCGCg -3'
miRNA:   3'- gCAGCAGCUGCA---------UGAGC--UUCAu---------GGCG- -5'
16265 3' -50.9 NC_004084.1 + 49067 0.68 0.884259
Target:  5'- uCGUgacCGUCGACGUGCgacggucgggaGAGGUcUCGCg -3'
miRNA:   3'- -GCA---GCAGCUGCAUGag---------CUUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 19656 0.68 0.885751
Target:  5'- gGUCGUCGuGCGUcaUCGGAcGUGCCu- -3'
miRNA:   3'- gCAGCAGC-UGCAugAGCUU-CAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 30157 0.68 0.885751
Target:  5'- aGUCGaagccgCGACGgugaACUacguaGGAGUACCGUu -3'
miRNA:   3'- gCAGCa-----GCUGCa---UGAg----CUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 7695 0.68 0.885751
Target:  5'- aCGUCGUCG-UGaACUCGcggAAGUACCc- -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGC---UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 38206 0.68 0.893053
Target:  5'- --aCGUCGACGUGCUUGc---GCCGg -3'
miRNA:   3'- gcaGCAGCUGCAUGAGCuucaUGGCg -5'
16265 3' -50.9 NC_004084.1 + 9943 0.68 0.90009
Target:  5'- aCGUgCGUCGGCGgg-UCGGAGUaGCCa- -3'
miRNA:   3'- -GCA-GCAGCUGCaugAGCUUCA-UGGcg -5'
16265 3' -50.9 NC_004084.1 + 11147 0.67 0.906857
Target:  5'- aCGUCGUCGAC---CUCGuAGUaggcGCCGg -3'
miRNA:   3'- -GCAGCAGCUGcauGAGCuUCA----UGGCg -5'
16265 3' -50.9 NC_004084.1 + 2147 0.67 0.913351
Target:  5'- gGUgGUCGACGUcguACUCGuAGgcgacACCaGCa -3'
miRNA:   3'- gCAgCAGCUGCA---UGAGCuUCa----UGG-CG- -5'
16265 3' -50.9 NC_004084.1 + 18366 0.67 0.913351
Target:  5'- gCGggGUCGACG-GCUCGGAcGUGCaGCc -3'
miRNA:   3'- -GCagCAGCUGCaUGAGCUU-CAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 48346 0.67 0.91957
Target:  5'- uCGUCcUCGGCGUGCUcuacgacguaCGAucgACCGUg -3'
miRNA:   3'- -GCAGcAGCUGCAUGA----------GCUucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11094 0.67 0.920176
Target:  5'- gGUCGgCGACGagaucgccguucgcgGCUCGAAGgaugucccagaGCCGCu -3'
miRNA:   3'- gCAGCaGCUGCa--------------UGAGCUUCa----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 39340 0.67 0.925511
Target:  5'- uCGaCGUCGACGUAgaCG----GCCGCg -3'
miRNA:   3'- -GCaGCAGCUGCAUgaGCuucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1979 0.67 0.925511
Target:  5'- cCGUCGagaUCGuCGUuC-CGAcGGUGCCGCu -3'
miRNA:   3'- -GCAGC---AGCuGCAuGaGCU-UCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 1190 0.67 0.92781
Target:  5'- gGUCGUgGACGUagucgcguaagcGgUCGAAGUccuucgagauguuggACUGCg -3'
miRNA:   3'- gCAGCAgCUGCA------------UgAGCUUCA---------------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 3920 0.67 0.931174
Target:  5'- aGUCGUCGaagGCGUcCUCGAaccggcuuuugaAGUGCaggguCGCg -3'
miRNA:   3'- gCAGCAGC---UGCAuGAGCU------------UCAUG-----GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.