miRNA display CGI


Results 101 - 113 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 27790 0.69 0.853995
Target:  5'- gCGUCGUCG-CGaACUCGuAGU-CgGCg -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGCuUCAuGgCG- -5'
16265 3' -50.9 NC_004084.1 + 5191 0.69 0.853995
Target:  5'- cCGcUCGUagaugacaCGACGgugcgACUCGAcGUGCUGCu -3'
miRNA:   3'- -GC-AGCA--------GCUGCa----UGAGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 30157 0.68 0.885751
Target:  5'- aGUCGaagccgCGACGgugaACUacguaGGAGUACCGUu -3'
miRNA:   3'- gCAGCa-----GCUGCa---UGAg----CUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 7695 0.68 0.885751
Target:  5'- aCGUCGUCG-UGaACUCGcggAAGUACCc- -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGC---UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 39340 0.67 0.925511
Target:  5'- uCGaCGUCGACGUAgaCG----GCCGCg -3'
miRNA:   3'- -GCaGCAGCUGCAUgaGCuucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11094 0.67 0.920176
Target:  5'- gGUCGgCGACGagaucgccguucgcgGCUCGAAGgaugucccagaGCCGCu -3'
miRNA:   3'- gCAGCaGCUGCa--------------UGAGCUUCa----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 48346 0.67 0.91957
Target:  5'- uCGUCcUCGGCGUGCUcuacgacguaCGAucgACCGUg -3'
miRNA:   3'- -GCAGcAGCUGCAUGA----------GCUucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 18366 0.67 0.913351
Target:  5'- gCGggGUCGACG-GCUCGGAcGUGCaGCc -3'
miRNA:   3'- -GCagCAGCUGCaUGAGCUU-CAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 2147 0.67 0.913351
Target:  5'- gGUgGUCGACGUcguACUCGuAGgcgacACCaGCa -3'
miRNA:   3'- gCAgCAGCUGCA---UGAGCuUCa----UGG-CG- -5'
16265 3' -50.9 NC_004084.1 + 11147 0.67 0.906857
Target:  5'- aCGUCGUCGAC---CUCGuAGUaggcGCCGg -3'
miRNA:   3'- -GCAGCAGCUGcauGAGCuUCA----UGGCg -5'
16265 3' -50.9 NC_004084.1 + 9943 0.68 0.90009
Target:  5'- aCGUgCGUCGGCGgg-UCGGAGUaGCCa- -3'
miRNA:   3'- -GCA-GCAGCUGCaugAGCUUCA-UGGcg -5'
16265 3' -50.9 NC_004084.1 + 38206 0.68 0.893053
Target:  5'- --aCGUCGACGUGCUUGc---GCCGg -3'
miRNA:   3'- gcaGCAGCUGCAUGAGCuucaUGGCg -5'
16265 3' -50.9 NC_004084.1 + 36249 0.66 0.959394
Target:  5'- cCGg-GUCGACGUcCUCGAGuGcGCCGa -3'
miRNA:   3'- -GCagCAGCUGCAuGAGCUU-CaUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.