miRNA display CGI


Results 41 - 60 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 57120 0.7 0.799557
Target:  5'- aGUCGagGACGUcCUCGguGUcGCCGUc -3'
miRNA:   3'- gCAGCagCUGCAuGAGCuuCA-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 16646 0.69 0.853151
Target:  5'- uCGUCGUCGACGUcgUCcggGAGGUccucgucGCCGg -3'
miRNA:   3'- -GCAGCAGCUGCAugAG---CUUCA-------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 30157 0.68 0.885751
Target:  5'- aGUCGaagccgCGACGgugaACUacguaGGAGUACCGUu -3'
miRNA:   3'- gCAGCa-----GCUGCa---UGAg----CUUCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 23036 0.7 0.809129
Target:  5'- gGUCGUCGACGUGauCUUGgcGcacuUCGCg -3'
miRNA:   3'- gCAGCAGCUGCAU--GAGCuuCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 7695 0.68 0.885751
Target:  5'- aCGUCGUCG-UGaACUCGcggAAGUACCc- -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGC---UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 14339 0.72 0.706829
Target:  5'- cCGUCuucUCGAgGUACUgCGAGGUGCuaCGCg -3'
miRNA:   3'- -GCAGc--AGCUgCAUGA-GCUUCAUG--GCG- -5'
16265 3' -50.9 NC_004084.1 + 49067 0.68 0.884259
Target:  5'- uCGUgacCGUCGACGUGCgacggucgggaGAGGUcUCGCg -3'
miRNA:   3'- -GCA---GCAGCUGCAUGag---------CUUCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 343 0.71 0.738814
Target:  5'- uCGUCGUUGAgccaggUGgccuCUCGAAacuGUGCCGCg -3'
miRNA:   3'- -GCAGCAGCU------GCau--GAGCUU---CAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 12858 0.71 0.738814
Target:  5'- --cCGUCGGCGUACuccgcuUCGAGGUcCuCGCg -3'
miRNA:   3'- gcaGCAGCUGCAUG------AGCUUCAuG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 52851 0.71 0.769827
Target:  5'- gCGgcaGUUGACGaucUGCUCGAgcGGUGCCGa -3'
miRNA:   3'- -GCag-CAGCUGC---AUGAGCU--UCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 16820 0.71 0.769827
Target:  5'- uCGUCcUCGACGUAgUCGAcGaucuCCGCu -3'
miRNA:   3'- -GCAGcAGCUGCAUgAGCUuCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 905 0.7 0.779894
Target:  5'- --cUGUCGGCGUcgUCGGAGUucGCUGCg -3'
miRNA:   3'- gcaGCAGCUGCAugAGCUUCA--UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11406 0.7 0.799557
Target:  5'- uCGaUCG-CGACGUcCUCGAGGaACuCGCg -3'
miRNA:   3'- -GC-AGCaGCUGCAuGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 18540 0.7 0.822215
Target:  5'- gGUCGauaccgcacugcagcUCaGCGUGCUCGAcGGcGCCGCg -3'
miRNA:   3'- gCAGC---------------AGcUGCAUGAGCU-UCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 48784 0.69 0.827705
Target:  5'- uGUCGgacgagaugcccUCGGCGUugaucGCUCGAAG-ACgCGCa -3'
miRNA:   3'- gCAGC------------AGCUGCA-----UGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 6259 0.69 0.836687
Target:  5'- -uUCGUCGACGUGgUCGgcGU-CCa- -3'
miRNA:   3'- gcAGCAGCUGCAUgAGCuuCAuGGcg -5'
16265 3' -50.9 NC_004084.1 + 30097 0.69 0.845454
Target:  5'- --aCGgCGGCGaGCUCGAGGUgcucacuacucGCCGCc -3'
miRNA:   3'- gcaGCaGCUGCaUGAGCUUCA-----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 5191 0.69 0.853995
Target:  5'- cCGcUCGUagaugacaCGACGgugcgACUCGAcGUGCUGCu -3'
miRNA:   3'- -GC-AGCA--------GCUGCa----UGAGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 27790 0.69 0.853995
Target:  5'- gCGUCGUCG-CGaACUCGuAGU-CgGCg -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGCuUCAuGgCG- -5'
16265 3' -50.9 NC_004084.1 + 13768 0.68 0.87037
Target:  5'- gGUCGcgcUgGGCGgGCUCGGAG-AUCGCg -3'
miRNA:   3'- gCAGC---AgCUGCaUGAGCUUCaUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.