miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 36216 0.73 0.61911
Target:  5'- gCGUCGU-GACGUuguGCUCGGAGaACuCGCc -3'
miRNA:   3'- -GCAGCAgCUGCA---UGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 46562 0.74 0.575192
Target:  5'- uCGUCGUCGGuCGUgaACUCGA--UAUCGCc -3'
miRNA:   3'- -GCAGCAGCU-GCA--UGAGCUucAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 52851 0.71 0.769827
Target:  5'- gCGgcaGUUGACGaucUGCUCGAgcGGUGCCGa -3'
miRNA:   3'- -GCag-CAGCUGC---AUGAGCU--UCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 49589 0.71 0.749275
Target:  5'- uCGUCGaCGAgGUACUUGGcgAGUucGCCGUc -3'
miRNA:   3'- -GCAGCaGCUgCAUGAGCU--UCA--UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 36249 0.66 0.959394
Target:  5'- cCGg-GUCGACGUcCUCGAGuGcGCCGa -3'
miRNA:   3'- -GCagCAGCUGCAuGAGCUU-CaUGGCg -5'
16265 3' -50.9 NC_004084.1 + 35422 0.66 0.959394
Target:  5'- uCGUCGUCGAUcucGCUCGcGAGgucgACCa- -3'
miRNA:   3'- -GCAGCAGCUGca-UGAGC-UUCa---UGGcg -5'
16265 3' -50.9 NC_004084.1 + 33261 0.66 0.959394
Target:  5'- aCGUCGagGACGUcgucaGCUCGuucuucGAGUACUa- -3'
miRNA:   3'- -GCAGCagCUGCA-----UGAGC------UUCAUGGcg -5'
16265 3' -50.9 NC_004084.1 + 37050 0.66 0.959002
Target:  5'- gGUCGUCGAUGUcgAUguucucggugUCGAgguccuccucgucAGUACCGa -3'
miRNA:   3'- gCAGCAGCUGCA--UG----------AGCU-------------UCAUGGCg -5'
16265 3' -50.9 NC_004084.1 + 18051 0.66 0.955362
Target:  5'- --aUGUCGGCGgcUUUGA--UGCCGCg -3'
miRNA:   3'- gcaGCAGCUGCauGAGCUucAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 26014 0.66 0.953676
Target:  5'- -cUCGUCGACGggaccgaacgcggACUCGAucgagcGGaGCUGCu -3'
miRNA:   3'- gcAGCAGCUGCa------------UGAGCU------UCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 46419 0.67 0.931174
Target:  5'- aGUUGUUGACGUcgcuggggaACUCGucGAGUugacuccaguCCGCg -3'
miRNA:   3'- gCAGCAGCUGCA---------UGAGC--UUCAu---------GGCG- -5'
16265 3' -50.9 NC_004084.1 + 58126 0.66 0.951067
Target:  5'- -cUCGUCGGCGg--UCGucGUcgaGCCGCc -3'
miRNA:   3'- gcAGCAGCUGCaugAGCuuCA---UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 2266 0.75 0.553481
Target:  5'- cCGUUGUUGAggagguaguCGUACUCGAGGgcAUCGCg -3'
miRNA:   3'- -GCAGCAGCU---------GCAUGAGCUUCa-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 36431 0.77 0.430254
Target:  5'- gCGUCGUCGACGUACgcCGucuGcACCGUg -3'
miRNA:   3'- -GCAGCAGCUGCAUGa-GCuu-CaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 5563 0.78 0.392841
Target:  5'- ---aGUCGACGUugUCGAGGUcGCCaGCg -3'
miRNA:   3'- gcagCAGCUGCAugAGCUUCA-UGG-CG- -5'
16265 3' -50.9 NC_004084.1 + 54590 0.78 0.383823
Target:  5'- cCGUCGUCGGCGUcgACgaagacuggaUCGAGGUcGCCGUu -3'
miRNA:   3'- -GCAGCAGCUGCA--UG----------AGCUUCA-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11729 0.78 0.383823
Target:  5'- aCGUCGccggCGACGUGCUCGA---AUCGCg -3'
miRNA:   3'- -GCAGCa---GCUGCAUGAGCUucaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 53248 0.8 0.301447
Target:  5'- aGUCGUCGAUcgACUCGA-GUGCUGCc -3'
miRNA:   3'- gCAGCAGCUGcaUGAGCUuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 686 0.82 0.233394
Target:  5'- -uUCGUCGACGUcCUCGAgcGGUGCaCGCa -3'
miRNA:   3'- gcAGCAGCUGCAuGAGCU--UCAUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 49559 1.13 0.002322
Target:  5'- cCGUCGUCGACGUACUCGAAGUACCGCu -3'
miRNA:   3'- -GCAGCAGCUGCAUGAGCUUCAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.