Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16265 | 3' | -50.9 | NC_004084.1 | + | 47384 | 0.71 | 0.769827 |
Target: 5'- gCGUCGUCGACGgcgaGCUCcAGGg--CGCg -3' miRNA: 3'- -GCAGCAGCUGCa---UGAGcUUCaugGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 43398 | 0.71 | 0.769827 |
Target: 5'- gGcCGUCGAC--GCUCGAcGaGCCGCa -3' miRNA: 3'- gCaGCAGCUGcaUGAGCUuCaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 30055 | 0.71 | 0.759616 |
Target: 5'- uCG-CGUCGuuGUGCcagccgUCGAGGcUGCCGCg -3' miRNA: 3'- -GCaGCAGCugCAUG------AGCUUC-AUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 48680 | 0.7 | 0.778894 |
Target: 5'- gGUCG-CGACGUGggagaucCUCGAA--GCCGCc -3' miRNA: 3'- gCAGCaGCUGCAU-------GAGCUUcaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 8288 | 0.75 | 0.517177 |
Target: 5'- -cUCGUCauccgGACGaucgcgggccucgACUCGAAGUACCGCg -3' miRNA: 3'- gcAGCAG-----CUGCa------------UGAGCUUCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 47895 | 0.72 | 0.706829 |
Target: 5'- -cUCGgcaacgCGACGgucGCUccgCGAGGUGCCGCg -3' miRNA: 3'- gcAGCa-----GCUGCa--UGA---GCUUCAUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 8817 | 0.72 | 0.706829 |
Target: 5'- cCGUCGaCGGCGaACUCGccAAGUACCu- -3' miRNA: 3'- -GCAGCaGCUGCaUGAGC--UUCAUGGcg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 41366 | 0.7 | 0.798589 |
Target: 5'- uCGUCGUCGACGauUACgaacucucgaUCGAGGUagagggcgaggagGCCGg -3' miRNA: 3'- -GCAGCAGCUGC--AUG----------AGCUUCA-------------UGGCg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 25168 | 0.66 | 0.943636 |
Target: 5'- aCGUCcUCGACGUccucaucgaACUCGuAGGggacggcccgcucgGCCGCc -3' miRNA: 3'- -GCAGcAGCUGCA---------UGAGC-UUCa-------------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 28022 | 0.66 | 0.941669 |
Target: 5'- uCGUCGUCGAaaagccCGUGCagGcGGUugUGUg -3' miRNA: 3'- -GCAGCAGCU------GCAUGagCuUCAugGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 53155 | 0.67 | 0.931174 |
Target: 5'- aCGUCGUCGACGagGC-CGAug-ACUGa -3' miRNA: 3'- -GCAGCAGCUGCa-UGaGCUucaUGGCg -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 53495 | 0.67 | 0.930621 |
Target: 5'- aGUaCGUCGACGg---CGAAGUcgucgugcgguagACUGCg -3' miRNA: 3'- gCA-GCAGCUGCaugaGCUUCA-------------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 29220 | 0.67 | 0.925511 |
Target: 5'- gCG-CGUCGACGUugUuCGcgggcGAGUACuCGUc -3' miRNA: 3'- -GCaGCAGCUGCAugA-GC-----UUCAUG-GCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 1484 | 0.67 | 0.91957 |
Target: 5'- gCGcCGaCGACG-ACUaCGAAGU-CCGCc -3' miRNA: 3'- -GCaGCaGCUGCaUGA-GCUUCAuGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 37845 | 0.67 | 0.913351 |
Target: 5'- -uUCGUCGACGgccgAUUCGAAcuGgcCCGUc -3' miRNA: 3'- gcAGCAGCUGCa---UGAGCUU--CauGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 29724 | 0.67 | 0.912714 |
Target: 5'- gCGUCGUCuGGCcguccgcccaGUGCUCGAcGUugagcucGCUGCg -3' miRNA: 3'- -GCAGCAG-CUG----------CAUGAGCUuCA-------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 53253 | 0.67 | 0.909488 |
Target: 5'- gGUCGUCGACGgcgACgagaucgggccgggCGAcGUccuggcgaccaGCCGCg -3' miRNA: 3'- gCAGCAGCUGCa--UGa-------------GCUuCA-----------UGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 35358 | 0.68 | 0.885751 |
Target: 5'- gCGUCGcCGGCG-ACgaucgCGAAGUG-CGCc -3' miRNA: 3'- -GCAGCaGCUGCaUGa----GCUUCAUgGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 36818 | 0.66 | 0.951067 |
Target: 5'- aCGagCGUCGACGaACgccgaUCGAAcGaGCCGCg -3' miRNA: 3'- -GCa-GCAGCUGCaUG-----AGCUU-CaUGGCG- -5' |
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16265 | 3' | -50.9 | NC_004084.1 | + | 49323 | 0.7 | 0.799557 |
Target: 5'- -cUCGUCGACaucGCccggUCGgcGUACCGCg -3' miRNA: 3'- gcAGCAGCUGca-UG----AGCuuCAUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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