miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 5' -54.7 NC_004084.1 + 53163 0.66 0.764756
Target:  5'- gACGAGGccgaugACUgaccccaGCGuGUUCGuCCGUCg -3'
miRNA:   3'- -UGCUCCa-----UGAac-----CGCuCAAGC-GGCAG- -5'
16265 5' -54.7 NC_004084.1 + 41393 0.66 0.754501
Target:  5'- uCGAGGUAgagGGCGAGgagGCCGg- -3'
miRNA:   3'- uGCUCCAUgaaCCGCUCaagCGGCag -5'
16265 5' -54.7 NC_004084.1 + 50148 0.66 0.754501
Target:  5'- gACGAGGUcgUUGuCGAGgaUGUCGUCa -3'
miRNA:   3'- -UGCUCCAugAACcGCUCaaGCGGCAG- -5'
16265 5' -54.7 NC_004084.1 + 14040 0.66 0.733628
Target:  5'- aACGucGGGUGCUUGGCGAGacgaaGagGUCa -3'
miRNA:   3'- -UGC--UCCAUGAACCGCUCaag--CggCAG- -5'
16265 5' -54.7 NC_004084.1 + 19591 0.66 0.733628
Target:  5'- cACGAGG-ACga--CGAGUUCGUgGUCa -3'
miRNA:   3'- -UGCUCCaUGaaccGCUCAAGCGgCAG- -5'
16265 5' -54.7 NC_004084.1 + 46174 0.66 0.733628
Target:  5'- cGCGAacuugcccagcuGGUAggcGGCGAGaUCGUCGUCg -3'
miRNA:   3'- -UGCU------------CCAUgaaCCGCUCaAGCGGCAG- -5'
16265 5' -54.7 NC_004084.1 + 36076 0.67 0.723033
Target:  5'- gACGAGG-ACcgcGaCGAGgUCGCCGUCu -3'
miRNA:   3'- -UGCUCCaUGaacC-GCUCaAGCGGCAG- -5'
16265 5' -54.7 NC_004084.1 + 25468 0.67 0.712348
Target:  5'- uCGAGGUuCgcgGGCGgcgucagaaGGUgcgCGCCGUCc -3'
miRNA:   3'- uGCUCCAuGaa-CCGC---------UCAa--GCGGCAG- -5'
16265 5' -54.7 NC_004084.1 + 55376 0.67 0.690751
Target:  5'- uCGAGGg---UGGCGAucaUCGCCGUa -3'
miRNA:   3'- uGCUCCaugaACCGCUca-AGCGGCAg -5'
16265 5' -54.7 NC_004084.1 + 56606 0.68 0.635961
Target:  5'- gGCGucGUcGCcggucGGCGAGUUCGCCGg- -3'
miRNA:   3'- -UGCucCA-UGaa---CCGCUCAAGCGGCag -5'
16265 5' -54.7 NC_004084.1 + 5692 0.69 0.60296
Target:  5'- uCGAGGUccGCUgGGuUGAGUUCGaggaCGUCg -3'
miRNA:   3'- uGCUCCA--UGAaCC-GCUCAAGCg---GCAG- -5'
16265 5' -54.7 NC_004084.1 + 70 0.69 0.58107
Target:  5'- aACGAGGUugUgucGG-GAGUcguugugcuugUUGCCGUCu -3'
miRNA:   3'- -UGCUCCAugAa--CCgCUCA-----------AGCGGCAG- -5'
16265 5' -54.7 NC_004084.1 + 2827 0.69 0.58107
Target:  5'- aACGAGGaACagcacgUUGGCGAGgaUGCCGa- -3'
miRNA:   3'- -UGCUCCaUG------AACCGCUCaaGCGGCag -5'
16265 5' -54.7 NC_004084.1 + 36571 0.7 0.517714
Target:  5'- uCGAGGUACggucaguacuccgcaUGGCGAGUUCuCUGUg -3'
miRNA:   3'- uGCUCCAUGa--------------ACCGCUCAAGcGGCAg -5'
16265 5' -54.7 NC_004084.1 + 28808 0.71 0.455307
Target:  5'- aGCcAGGUGCcguugugGGCGAgcaucgcgaccgGUUCGCCGUCu -3'
miRNA:   3'- -UGcUCCAUGaa-----CCGCU------------CAAGCGGCAG- -5'
16265 5' -54.7 NC_004084.1 + 10238 0.71 0.455307
Target:  5'- uUGAGGUcGCcUGGUGAG-UCGCgGUCg -3'
miRNA:   3'- uGCUCCA-UGaACCGCUCaAGCGgCAG- -5'
16265 5' -54.7 NC_004084.1 + 10895 0.72 0.416661
Target:  5'- gGCGAucgucgGGUACUcccgaucGGgGAGUUCGUCGUCu -3'
miRNA:   3'- -UGCU------CCAUGAa------CCgCUCAAGCGGCAG- -5'
16265 5' -54.7 NC_004084.1 + 1240 0.77 0.202502
Target:  5'- uGCGAGGUgucguaucGCUUGGCGAGUUCG--GUCu -3'
miRNA:   3'- -UGCUCCA--------UGAACCGCUCAAGCggCAG- -5'
16265 5' -54.7 NC_004084.1 + 49594 1.1 0.001035
Target:  5'- gACGAGGUACUUGGCGAGUUCGCCGUCg -3'
miRNA:   3'- -UGCUCCAUGAACCGCUCAAGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.