miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16266 3' -55.4 NC_004084.1 + 49205 1.11 0.000913
Target:  5'- cUCCACCCGAACGCCUUCGCGUCGAACg -3'
miRNA:   3'- -AGGUGGGCUUGCGGAAGCGCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 56720 0.79 0.153256
Target:  5'- cUCCGCUgggacuCGGACGuCCUUCGCGUCGAu- -3'
miRNA:   3'- -AGGUGG------GCUUGC-GGAAGCGCAGCUug -5'
16266 3' -55.4 NC_004084.1 + 38774 0.79 0.157473
Target:  5'- cUCCACauGGACGCCaUCGuCGUCGAGCc -3'
miRNA:   3'- -AGGUGggCUUGCGGaAGC-GCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 54143 0.78 0.166222
Target:  5'- -gCACCUG-ACGCCgUUCGCGUCGAAg -3'
miRNA:   3'- agGUGGGCuUGCGG-AAGCGCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 51522 0.74 0.30153
Target:  5'- gUCCgACUCGAGCGCCauuucgaUCGCGUCGuGGCc -3'
miRNA:   3'- -AGG-UGGGCUUGCGGa------AGCGCAGC-UUG- -5'
16266 3' -55.4 NC_004084.1 + 15548 0.74 0.324398
Target:  5'- gCCugCCGGAgUGCCagaUCGCGuUCGAACg -3'
miRNA:   3'- aGGugGGCUU-GCGGa--AGCGC-AGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 1002 0.72 0.382658
Target:  5'- gUCCACCuCGAGCucGCCggCGaCGUCGAcGCg -3'
miRNA:   3'- -AGGUGG-GCUUG--CGGaaGC-GCAGCU-UG- -5'
16266 3' -55.4 NC_004084.1 + 36478 0.72 0.39153
Target:  5'- gUCguCCUGGACGCCgacaauuuccUCGaCGUCGAACu -3'
miRNA:   3'- -AGguGGGCUUGCGGa---------AGC-GCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 43674 0.72 0.417072
Target:  5'- aCCGCgCCGAGUGCCUgcgacggacgggCGCGUCGAc- -3'
miRNA:   3'- aGGUG-GGCUUGCGGAa-----------GCGCAGCUug -5'
16266 3' -55.4 NC_004084.1 + 50100 0.71 0.428325
Target:  5'- gUUCAUCCGAGCGCgguaCUUCGaGUCGAGg -3'
miRNA:   3'- -AGGUGGGCUUGCG----GAAGCgCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 40205 0.7 0.477057
Target:  5'- -aCGCUCgGAACGCCUUCGCcaCGGAUu -3'
miRNA:   3'- agGUGGG-CUUGCGGAAGCGcaGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 17026 0.7 0.497309
Target:  5'- aUCCGCgaCCGAGCGUCUgCGCccGUCGAuGCg -3'
miRNA:   3'- -AGGUG--GGCUUGCGGAaGCG--CAGCU-UG- -5'
16266 3' -55.4 NC_004084.1 + 13460 0.7 0.507578
Target:  5'- gUCCACUcgcgaCGAACGCCguucUCGuCGaCGAACg -3'
miRNA:   3'- -AGGUGG-----GCUUGCGGa---AGC-GCaGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 40028 0.7 0.517937
Target:  5'- cCCGCCUGGACGCUUcugUGCuGUUGAAa -3'
miRNA:   3'- aGGUGGGCUUGCGGAa--GCG-CAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 10372 0.7 0.528378
Target:  5'- gCCGUCCGGAUGagUUCGaCGUCGAGCu -3'
miRNA:   3'- aGGUGGGCUUGCggAAGC-GCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 35853 0.69 0.549486
Target:  5'- aUCGgCCGAACGCCga---GUCGAACa -3'
miRNA:   3'- aGGUgGGCUUGCGGaagcgCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 6775 0.69 0.560139
Target:  5'- cUCCugCgGAACGCCgaaGaCGUCGGGg -3'
miRNA:   3'- -AGGugGgCUUGCGGaagC-GCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 14643 0.68 0.592405
Target:  5'- cUCCGCCggCGAGCGCCcagUCGaUGcccgCGAGCg -3'
miRNA:   3'- -AGGUGG--GCUUGCGGa--AGC-GCa---GCUUG- -5'
16266 3' -55.4 NC_004084.1 + 55586 0.68 0.603237
Target:  5'- aUCCACCgCGGACGCCga-G-GUUGAGg -3'
miRNA:   3'- -AGGUGG-GCUUGCGGaagCgCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 18252 0.68 0.603237
Target:  5'- gCCAuCCCGAugACGUCUUCGaaccgGUCGAc- -3'
miRNA:   3'- aGGU-GGGCU--UGCGGAAGCg----CAGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.