miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16266 5' -54.8 NC_004084.1 + 1658 0.66 0.78805
Target:  5'- -cGCUCGuCAUCau-GGGCUCGucgGGCGa -3'
miRNA:   3'- ucUGAGCuGUAGgcuUCCGAGC---UCGC- -5'
16266 5' -54.8 NC_004084.1 + 3543 0.67 0.684023
Target:  5'- cGcCUCGACGUUCGAagAGGCcagGAGCa -3'
miRNA:   3'- uCuGAGCUGUAGGCU--UCCGag-CUCGc -5'
16266 5' -54.8 NC_004084.1 + 3550 0.67 0.692672
Target:  5'- cGACUCGAacuggcaggucgGUCCGAuGGaaagCGAGCGg -3'
miRNA:   3'- uCUGAGCUg-----------UAGGCUuCCga--GCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 4197 0.66 0.778185
Target:  5'- cGACgUCGAgAUCCGA---CUCGAGCc -3'
miRNA:   3'- uCUG-AGCUgUAGGCUuccGAGCUCGc -5'
16266 5' -54.8 NC_004084.1 + 6319 0.66 0.78805
Target:  5'- cGACgUCGACAUcCCGgcGGUaacgUCG-GCGa -3'
miRNA:   3'- uCUG-AGCUGUA-GGCuuCCG----AGCuCGC- -5'
16266 5' -54.8 NC_004084.1 + 7448 0.74 0.334076
Target:  5'- gAGAcCUCGGaGUCCGAcGGCgacUCGAGCGg -3'
miRNA:   3'- -UCU-GAGCUgUAGGCUuCCG---AGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 8291 0.66 0.78707
Target:  5'- cGGaACUCGGCAUCCcguuGGGCUuCGuccagacGGCGu -3'
miRNA:   3'- -UC-UGAGCUGUAGGcu--UCCGA-GC-------UCGC- -5'
16266 5' -54.8 NC_004084.1 + 9125 0.71 0.480313
Target:  5'- aGGACUCGaucgGCGUCCGucGGGCggaagUCGAGgGg -3'
miRNA:   3'- -UCUGAGC----UGUAGGCu-UCCG-----AGCUCgC- -5'
16266 5' -54.8 NC_004084.1 + 10270 0.66 0.78805
Target:  5'- cGGAUcaCGAUGUUCGAGGGCauccgguacaucUCGGGCa -3'
miRNA:   3'- -UCUGa-GCUGUAGGCUUCCG------------AGCUCGc -5'
16266 5' -54.8 NC_004084.1 + 12936 0.68 0.662273
Target:  5'- uAGACgcugaUCGACG-CCGAacgAGGCUCG-GCu -3'
miRNA:   3'- -UCUG-----AGCUGUaGGCU---UCCGAGCuCGc -5'
16266 5' -54.8 NC_004084.1 + 17320 0.66 0.78707
Target:  5'- gAGAUUaCGAUcgaggagAUCaacgccggaggCGAGGGCUCGAGUGa -3'
miRNA:   3'- -UCUGA-GCUG-------UAG-----------GCUUCCGAGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 18316 0.69 0.585794
Target:  5'- aGGACUCGAag-CCGcuGGCgUGGGCGu -3'
miRNA:   3'- -UCUGAGCUguaGGCuuCCGaGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 18573 0.73 0.350474
Target:  5'- cGGCgccgCGGCcgCCGAuGGaCUCGAGCGc -3'
miRNA:   3'- uCUGa---GCUGuaGGCUuCC-GAGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 23213 0.76 0.246961
Target:  5'- cGGCUCGAUcccgacgAUUCGGAGgaGCUCGAGCGg -3'
miRNA:   3'- uCUGAGCUG-------UAGGCUUC--CGAGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 25060 0.67 0.693751
Target:  5'- uAGACUCGGCgguugagGUCCGAGGcCUC-AGCu -3'
miRNA:   3'- -UCUGAGCUG-------UAGGCUUCcGAGcUCGc -5'
16266 5' -54.8 NC_004084.1 + 27826 0.67 0.69483
Target:  5'- cGACcgCGGCGUCCGcGAGGUcacggaCGAGCu -3'
miRNA:   3'- uCUGa-GCUGUAGGC-UUCCGa-----GCUCGc -5'
16266 5' -54.8 NC_004084.1 + 31329 0.68 0.629465
Target:  5'- cGGCUCGGgAUCCGGAGcaGUucgucgucgacgUCGAGCa -3'
miRNA:   3'- uCUGAGCUgUAGGCUUC--CG------------AGCUCGc -5'
16266 5' -54.8 NC_004084.1 + 34055 0.68 0.61852
Target:  5'- cGGCUCG-CAUCuCGAA--CUCGAGCGu -3'
miRNA:   3'- uCUGAGCuGUAG-GCUUccGAGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 35163 0.75 0.302987
Target:  5'- cAGACcgaaccguUCGACAUCCGGuccGGGCcgcUCGAGCu -3'
miRNA:   3'- -UCUG--------AGCUGUAGGCU---UCCG---AGCUCGc -5'
16266 5' -54.8 NC_004084.1 + 36764 0.68 0.62837
Target:  5'- cGGGCUCGAUAgUUCGAgucGGGUUCGccccgcuGGCGg -3'
miRNA:   3'- -UCUGAGCUGU-AGGCU---UCCGAGC-------UCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.