miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16266 5' -54.8 NC_004084.1 + 42015 0.68 0.61852
Target:  5'- cGGACUCu-CAUcCCGGAGGUgaggccgaugUCGAGUGa -3'
miRNA:   3'- -UCUGAGcuGUA-GGCUUCCG----------AGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 34055 0.68 0.61852
Target:  5'- cGGCUCG-CAUCuCGAA--CUCGAGCGu -3'
miRNA:   3'- uCUGAGCuGUAG-GCUUccGAGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 18316 0.69 0.585794
Target:  5'- aGGACUCGAag-CCGcuGGCgUGGGCGu -3'
miRNA:   3'- -UCUGAGCUguaGGCuuCCGaGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 44413 0.69 0.585794
Target:  5'- uGGCUCGGCAacccguUCCGAAcGgaCGAGCa -3'
miRNA:   3'- uCUGAGCUGU------AGGCUUcCgaGCUCGc -5'
16266 5' -54.8 NC_004084.1 + 40761 0.69 0.579282
Target:  5'- cGGACUCGGCAgucgaagccgaagcgUCCGAAcucGGCaguaaCGAGCu -3'
miRNA:   3'- -UCUGAGCUGU---------------AGGCUU---CCGa----GCUCGc -5'
16266 5' -54.8 NC_004084.1 + 47480 0.69 0.57495
Target:  5'- aGGACUCGcCAUCCcauuugaccucGAGGCccUCGAGUGg -3'
miRNA:   3'- -UCUGAGCuGUAGGc----------UUCCG--AGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 46811 0.7 0.511126
Target:  5'- -aACUCGGCGUCCGgcGGCUCuucuucuGCu -3'
miRNA:   3'- ucUGAGCUGUAGGCuuCCGAGcu-----CGc -5'
16266 5' -54.8 NC_004084.1 + 9125 0.71 0.480313
Target:  5'- aGGACUCGaucgGCGUCCGucGGGCggaagUCGAGgGg -3'
miRNA:   3'- -UCUGAGC----UGUAGGCu-UCCG-----AGCUCgC- -5'
16266 5' -54.8 NC_004084.1 + 55618 0.72 0.440704
Target:  5'- cGGcCUCGGCGUCUGGuacacGCUCGAGUGc -3'
miRNA:   3'- -UCuGAGCUGUAGGCUuc---CGAGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 58039 0.72 0.421607
Target:  5'- cGGCggCGACGUCCccGGGCUCGcGGCa -3'
miRNA:   3'- uCUGa-GCUGUAGGcuUCCGAGC-UCGc -5'
16266 5' -54.8 NC_004084.1 + 18573 0.73 0.350474
Target:  5'- cGGCgccgCGGCcgCCGAuGGaCUCGAGCGc -3'
miRNA:   3'- uCUGa---GCUGuaGGCUuCC-GAGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 7448 0.74 0.334076
Target:  5'- gAGAcCUCGGaGUCCGAcGGCgacUCGAGCGg -3'
miRNA:   3'- -UCU-GAGCUgUAGGCUuCCG---AGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 35163 0.75 0.302987
Target:  5'- cAGACcgaaccguUCGACAUCCGGuccGGGCcgcUCGAGCu -3'
miRNA:   3'- -UCUG--------AGCUGUAGGCU---UCCG---AGCUCGc -5'
16266 5' -54.8 NC_004084.1 + 23213 0.76 0.246961
Target:  5'- cGGCUCGAUcccgacgAUUCGGAGgaGCUCGAGCGg -3'
miRNA:   3'- uCUGAGCUG-------UAGGCUUC--CGAGCUCGC- -5'
16266 5' -54.8 NC_004084.1 + 49239 1.1 0.001156
Target:  5'- cAGACUCGACAUCCGAAGGCUCGAGCGg -3'
miRNA:   3'- -UCUGAGCUGUAGGCUUCCGAGCUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.