miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16268 3' -54.6 NC_004084.1 + 9016 0.66 0.805596
Target:  5'- uGACCACCgcguaGUCCUCGGaGAggGcauGGa -3'
miRNA:   3'- -CUGGUGGag---UAGGAGCC-CUagCau-CC- -5'
16268 3' -54.6 NC_004084.1 + 53537 0.66 0.786369
Target:  5'- cGCCuCCUguUCUUCGGGAaCG-AGGu -3'
miRNA:   3'- cUGGuGGAguAGGAGCCCUaGCaUCC- -5'
16268 3' -54.6 NC_004084.1 + 36885 0.66 0.776514
Target:  5'- gGGCCuCCUCAagCUCGGcGAacUCGgcGGc -3'
miRNA:   3'- -CUGGuGGAGUagGAGCC-CU--AGCauCC- -5'
16268 3' -54.6 NC_004084.1 + 14493 0.66 0.766513
Target:  5'- cGGCUccuGCCUCGgccaaCUCGGGuUCGUGGc -3'
miRNA:   3'- -CUGG---UGGAGUag---GAGCCCuAGCAUCc -5'
16268 3' -54.6 NC_004084.1 + 57262 0.66 0.766513
Target:  5'- cACCGCCUCcuucUCCggCGGGG-CGUucAGGu -3'
miRNA:   3'- cUGGUGGAGu---AGGa-GCCCUaGCA--UCC- -5'
16268 3' -54.6 NC_004084.1 + 34931 0.67 0.756375
Target:  5'- cGGCCAUCUCGUCa-CGGGcguUCGUGc- -3'
miRNA:   3'- -CUGGUGGAGUAGgaGCCCu--AGCAUcc -5'
16268 3' -54.6 NC_004084.1 + 49473 0.67 0.756375
Target:  5'- cGCCGCU--GUCCUCGGaGUCGUcGGc -3'
miRNA:   3'- cUGGUGGagUAGGAGCCcUAGCAuCC- -5'
16268 3' -54.6 NC_004084.1 + 2826 0.67 0.746113
Target:  5'- uACgACCUCAaCCUCGgcguccgcgguGGAUCGcAGGa -3'
miRNA:   3'- cUGgUGGAGUaGGAGC-----------CCUAGCaUCC- -5'
16268 3' -54.6 NC_004084.1 + 54937 0.67 0.746113
Target:  5'- cGAUCGggauCCUCcgCCUCGGGAU-GcGGGa -3'
miRNA:   3'- -CUGGU----GGAGuaGGAGCCCUAgCaUCC- -5'
16268 3' -54.6 NC_004084.1 + 9230 0.67 0.732605
Target:  5'- uGACCugCUCgAUCagggcguccagcguCUCGGGGUCGUc-- -3'
miRNA:   3'- -CUGGugGAG-UAG--------------GAGCCCUAGCAucc -5'
16268 3' -54.6 NC_004084.1 + 25258 0.67 0.72526
Target:  5'- aGAUCGCg--GUUCUCGGGAUCGUucuGGu -3'
miRNA:   3'- -CUGGUGgagUAGGAGCCCUAGCAu--CC- -5'
16268 3' -54.6 NC_004084.1 + 5846 0.67 0.714691
Target:  5'- cGCCGCCgcaGUCCUCGuGGAUCu---- -3'
miRNA:   3'- cUGGUGGag-UAGGAGC-CCUAGcaucc -5'
16268 3' -54.6 NC_004084.1 + 13915 0.68 0.682548
Target:  5'- cGACCGCUUCGcggaacUCCUCGucAUCGUuuAGGc -3'
miRNA:   3'- -CUGGUGGAGU------AGGAGCccUAGCA--UCC- -5'
16268 3' -54.6 NC_004084.1 + 56464 0.68 0.671725
Target:  5'- cGAUCACgaUgAUCg-CGGGGUCGUAGGc -3'
miRNA:   3'- -CUGGUGg-AgUAGgaGCCCUAGCAUCC- -5'
16268 3' -54.6 NC_004084.1 + 25538 0.68 0.660865
Target:  5'- -uCCACUagGUCCUCGGGAagGUAc- -3'
miRNA:   3'- cuGGUGGagUAGGAGCCCUagCAUcc -5'
16268 3' -54.6 NC_004084.1 + 57105 0.69 0.632533
Target:  5'- aGACCGCCUCgauccagucgaggacGUCCUCGGuGUCGc--- -3'
miRNA:   3'- -CUGGUGGAG---------------UAGGAGCCcUAGCaucc -5'
16268 3' -54.6 NC_004084.1 + 7273 0.69 0.595502
Target:  5'- cGAUCGCCUCcUCgUUCGGGAUCGc--- -3'
miRNA:   3'- -CUGGUGGAGuAG-GAGCCCUAGCaucc -5'
16268 3' -54.6 NC_004084.1 + 24812 0.7 0.573861
Target:  5'- cGAUUACCUCAUCCUUaGGGA-CGgcGa -3'
miRNA:   3'- -CUGGUGGAGUAGGAG-CCCUaGCauCc -5'
16268 3' -54.6 NC_004084.1 + 2359 0.7 0.573861
Target:  5'- -uCCGCgUCGUCCUCGaaGUCGUAGa -3'
miRNA:   3'- cuGGUGgAGUAGGAGCccUAGCAUCc -5'
16268 3' -54.6 NC_004084.1 + 55707 0.73 0.36721
Target:  5'- cGACCGCCUCcaCCUCGaGAUCG-AGGc -3'
miRNA:   3'- -CUGGUGGAGuaGGAGCcCUAGCaUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.