miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16268 5' -53.7 NC_004084.1 + 50005 0.66 0.840428
Target:  5'- uCgCCCAUGAUCacguUGUCGccgaGCGGGGUGu -3'
miRNA:   3'- -GgGGGUACUAGc---ACAGCc---UGCUCUAC- -5'
16268 5' -53.7 NC_004084.1 + 2520 0.67 0.813428
Target:  5'- uCCUCCGgcgGAUCGUcGUCGcACG-GGUGg -3'
miRNA:   3'- -GGGGGUa--CUAGCA-CAGCcUGCuCUAC- -5'
16268 5' -53.7 NC_004084.1 + 25 0.67 0.794477
Target:  5'- --gUCGaGGUCGUGUCGGccacCGAGAUGg -3'
miRNA:   3'- gggGGUaCUAGCACAGCCu---GCUCUAC- -5'
16268 5' -53.7 NC_004084.1 + 47664 0.68 0.73397
Target:  5'- gCCCgAaGAUCG-GUCGGGCaGGGAUa -3'
miRNA:   3'- gGGGgUaCUAGCaCAGCCUG-CUCUAc -5'
16268 5' -53.7 NC_004084.1 + 11100 0.7 0.626244
Target:  5'- aCCUCCAUucGAUCGacgucucGUCGGACGAGu-- -3'
miRNA:   3'- -GGGGGUA--CUAGCa------CAGCCUGCUCuac -5'
16268 5' -53.7 NC_004084.1 + 48771 1.09 0.001822
Target:  5'- uCCCCCAUGAUCGUGUCGGACGAGAUGc -3'
miRNA:   3'- -GGGGGUACUAGCACAGCCUGCUCUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.