Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16269 | 3' | -59.6 | NC_004084.1 | + | 48630 | 1.1 | 0.000337 |
Target: 5'- gUGGAGGCGCUGUCGAACGGCCGCAGCc -3' miRNA: 3'- -ACCUCCGCGACAGCUUGCCGGCGUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 17285 | 0.76 | 0.111226 |
Target: 5'- gUGGAGGCGgUGgCG-GCGGUgGCGGCg -3' miRNA: 3'- -ACCUCCGCgACaGCuUGCCGgCGUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 39834 | 0.73 | 0.180216 |
Target: 5'- -uGAuGGCGCUcgaGUCcaucGGCGGCCGCGGCg -3' miRNA: 3'- acCU-CCGCGA---CAGc---UUGCCGGCGUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 22458 | 0.73 | 0.180216 |
Target: 5'- cGGGGGCGCUcgCG-ACGGCUGCgugguGGCg -3' miRNA: 3'- aCCUCCGCGAcaGCuUGCCGGCG-----UCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 51157 | 0.72 | 0.210594 |
Target: 5'- aGGAGGCGa--UCGAGaCGGUCGCcgAGCa -3' miRNA: 3'- aCCUCCGCgacAGCUU-GCCGGCG--UCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 753 | 0.72 | 0.221662 |
Target: 5'- cGGAGGCGCUGgaccaccaggcCGAuCGGCuCGUcgaGGCg -3' miRNA: 3'- aCCUCCGCGACa----------GCUuGCCG-GCG---UCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 10912 | 0.69 | 0.336516 |
Target: 5'- aGGAGGCGCUGccacUCGAG-GGCCucgaGGUc -3' miRNA: 3'- aCCUCCGCGAC----AGCUUgCCGGcg--UCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 14842 | 0.69 | 0.336516 |
Target: 5'- cUGGAGGaucCGCgccucGUCGGgaugACGGCCGcCGGUc -3' miRNA: 3'- -ACCUCC---GCGa----CAGCU----UGCCGGC-GUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 10473 | 0.68 | 0.386276 |
Target: 5'- aGGAcGGC-CUGaCGGACGGCCuCgAGCg -3' miRNA: 3'- aCCU-CCGcGACaGCUUGCCGGcG-UCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 38211 | 0.68 | 0.395028 |
Target: 5'- cGGccGCGCUGUCGuucgauGCGGCgacUGCGGa -3' miRNA: 3'- aCCucCGCGACAGCu-----UGCCG---GCGUCg -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 30228 | 0.68 | 0.402121 |
Target: 5'- cGGAGGCGauguccgcggcgacGUCGAACaGGCCGaggacggacuauucCAGCc -3' miRNA: 3'- aCCUCCGCga------------CAGCUUG-CCGGC--------------GUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 54486 | 0.67 | 0.412911 |
Target: 5'- cGGcGGgGaugaUGUCGggUGcGCCGUAGUg -3' miRNA: 3'- aCCuCCgCg---ACAGCuuGC-CGGCGUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 55980 | 0.67 | 0.412911 |
Target: 5'- cGGAGGgGCUGaUCGccGAUGGCgaGCAucGCu -3' miRNA: 3'- aCCUCCgCGAC-AGC--UUGCCGg-CGU--CG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 26687 | 0.67 | 0.412911 |
Target: 5'- aGGAGGCGacaucGUCGAuauCGG-CGUAGUc -3' miRNA: 3'- aCCUCCGCga---CAGCUu--GCCgGCGUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 57480 | 0.67 | 0.431286 |
Target: 5'- cGGAGuCGaacuUGUCGAGCcagaGGCCGUGGUg -3' miRNA: 3'- aCCUCcGCg---ACAGCUUG----CCGGCGUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 23232 | 0.67 | 0.431286 |
Target: 5'- cGGAGGaGC--UCGAGCGGCC-CGGa -3' miRNA: 3'- aCCUCCgCGacAGCUUGCCGGcGUCg -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 53456 | 0.67 | 0.435018 |
Target: 5'- -cGAGGCGCUcuggagccacugcucGauuucguccUCGAGCGGCUGgAGCc -3' miRNA: 3'- acCUCCGCGA---------------C---------AGCUUGCCGGCgUCG- -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 2723 | 0.67 | 0.440651 |
Target: 5'- gUGGAGGCG--GUCGAACcagaGCgGCAGa -3' miRNA: 3'- -ACCUCCGCgaCAGCUUGc---CGgCGUCg -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 56559 | 0.67 | 0.440651 |
Target: 5'- aGGAGGCGaC-GUCGuccguCGcGCUGCAGg -3' miRNA: 3'- aCCUCCGC-GaCAGCuu---GC-CGGCGUCg -5' |
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16269 | 3' | -59.6 | NC_004084.1 | + | 35883 | 0.67 | 0.449178 |
Target: 5'- gGGAGGCcaguGCcgGUCGGACgucccgcuggaguGGCCGCGu- -3' miRNA: 3'- aCCUCCG----CGa-CAGCUUG-------------CCGGCGUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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