miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1627 3' -54.3 NC_001347.2 + 65707 0.66 0.97428
Target:  5'- gCUGcUGCGcgACACgGuGGcgGCGGUGGAGg -3'
miRNA:   3'- -GAC-AUGCa-UGUGgCuCC--UGCCACCUU- -5'
1627 3' -54.3 NC_001347.2 + 142567 0.66 0.97428
Target:  5'- gCUGgcgGCGUcggcgggaGCAgCGGGGGCGGcGGGGg -3'
miRNA:   3'- -GACa--UGCA--------UGUgGCUCCUGCCaCCUU- -5'
1627 3' -54.3 NC_001347.2 + 143654 0.67 0.971604
Target:  5'- gUGUACGggauccugGCGCCgGAGGcCGGccUGGAGg -3'
miRNA:   3'- gACAUGCa-------UGUGG-CUCCuGCC--ACCUU- -5'
1627 3' -54.3 NC_001347.2 + 34944 0.67 0.971604
Target:  5'- gUG-ACGcACACCGuGGAuaUGGUGGAc -3'
miRNA:   3'- gACaUGCaUGUGGCuCCU--GCCACCUu -5'
1627 3' -54.3 NC_001347.2 + 181595 0.67 0.958892
Target:  5'- aCUGUcGCuGUGCACCGAuGAC-GUGGAGg -3'
miRNA:   3'- -GACA-UG-CAUGUGGCUcCUGcCACCUU- -5'
1627 3' -54.3 NC_001347.2 + 84425 0.69 0.922924
Target:  5'- cCUGgACGggggGgACCGGGGGCGG-GGAc -3'
miRNA:   3'- -GACaUGCa---UgUGGCUCCUGCCaCCUu -5'
1627 3' -54.3 NC_001347.2 + 40650 0.69 0.905635
Target:  5'- gUGUGCGggacgguguugGgGCCGGGGACGG-GGGu -3'
miRNA:   3'- gACAUGCa----------UgUGGCUCCUGCCaCCUu -5'
1627 3' -54.3 NC_001347.2 + 171718 0.69 0.899414
Target:  5'- -aGUugGUG-ACCGAGG-CGGUGGu- -3'
miRNA:   3'- gaCAugCAUgUGGCUCCuGCCACCuu -5'
1627 3' -54.3 NC_001347.2 + 102153 0.71 0.855198
Target:  5'- gCUGUAUcUGC-CCGAGGAucgcgguuacaccaCGGUGGAAa -3'
miRNA:   3'- -GACAUGcAUGuGGCUCCU--------------GCCACCUU- -5'
1627 3' -54.3 NC_001347.2 + 35864 0.72 0.78179
Target:  5'- cCUGUACGUacACGCCGAcGAC-GUGGAGu -3'
miRNA:   3'- -GACAUGCA--UGUGGCUcCUGcCACCUU- -5'
1627 3' -54.3 NC_001347.2 + 137256 1.06 0.010029
Target:  5'- cCUGUACGUACACCGAGGACGGUGGAAc -3'
miRNA:   3'- -GACAUGCAUGUGGCUCCUGCCACCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.