Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1627 | 3' | -54.3 | NC_001347.2 | + | 137256 | 1.06 | 0.010029 |
Target: 5'- cCUGUACGUACACCGAGGACGGUGGAAc -3' miRNA: 3'- -GACAUGCAUGUGGCUCCUGCCACCUU- -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 35864 | 0.72 | 0.78179 |
Target: 5'- cCUGUACGUacACGCCGAcGAC-GUGGAGu -3' miRNA: 3'- -GACAUGCA--UGUGGCUcCUGcCACCUU- -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 102153 | 0.71 | 0.855198 |
Target: 5'- gCUGUAUcUGC-CCGAGGAucgcgguuacaccaCGGUGGAAa -3' miRNA: 3'- -GACAUGcAUGuGGCUCCU--------------GCCACCUU- -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 171718 | 0.69 | 0.899414 |
Target: 5'- -aGUugGUG-ACCGAGG-CGGUGGu- -3' miRNA: 3'- gaCAugCAUgUGGCUCCuGCCACCuu -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 40650 | 0.69 | 0.905635 |
Target: 5'- gUGUGCGggacgguguugGgGCCGGGGACGG-GGGu -3' miRNA: 3'- gACAUGCa----------UgUGGCUCCUGCCaCCUu -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 84425 | 0.69 | 0.922924 |
Target: 5'- cCUGgACGggggGgACCGGGGGCGG-GGAc -3' miRNA: 3'- -GACaUGCa---UgUGGCUCCUGCCaCCUu -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 181595 | 0.67 | 0.958892 |
Target: 5'- aCUGUcGCuGUGCACCGAuGAC-GUGGAGg -3' miRNA: 3'- -GACA-UG-CAUGUGGCUcCUGcCACCUU- -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 34944 | 0.67 | 0.971604 |
Target: 5'- gUG-ACGcACACCGuGGAuaUGGUGGAc -3' miRNA: 3'- gACaUGCaUGUGGCuCCU--GCCACCUu -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 143654 | 0.67 | 0.971604 |
Target: 5'- gUGUACGggauccugGCGCCgGAGGcCGGccUGGAGg -3' miRNA: 3'- gACAUGCa-------UGUGG-CUCCuGCC--ACCUU- -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 142567 | 0.66 | 0.97428 |
Target: 5'- gCUGgcgGCGUcggcgggaGCAgCGGGGGCGGcGGGGg -3' miRNA: 3'- -GACa--UGCA--------UGUgGCUCCUGCCaCCUU- -5' |
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1627 | 3' | -54.3 | NC_001347.2 | + | 65707 | 0.66 | 0.97428 |
Target: 5'- gCUGcUGCGcgACACgGuGGcgGCGGUGGAGg -3' miRNA: 3'- -GAC-AUGCa-UGUGgCuCC--UGCCACCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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