miRNA: 3'- -CCAAGgU-------GGAUAGACuuUAaAGGCAU- -5'
miRNA: 3'- -CCaaGGUGGaua-GACuUUAAAGGCau -5'
miRNA: 3'- -CCaaGGUGGA------------UAGACUUUaaaGGCAU- -5'
miRNA: 3'- -CCAAGGUGGAUAGACUUUAAAGGCAU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1627 | 5' | -45.1 | NC_001347.2 | + | 53047 | 0.66 | 1 |
|
Target: 5'- cGGUUUgGgcaacgcCCUGUCUGgcGUcUCCGUGg -3' miRNA: 3'- -CCAAGgU-------GGAUAGACuuUAaAGGCAU- -5' |
|||||||
| 1627 | 5' | -45.1 | NC_001347.2 | + | 128285 | 0.66 | 1 |
|
Target: 5'- cGGcgCCACUgccgCUGcGAUUUCCGa- -3' miRNA: 3'- -CCaaGGUGGaua-GACuUUAAAGGCau -5' |
|||||||
| 1627 | 5' | -45.1 | NC_001347.2 | + | 39702 | 0.71 | 0.999565 |
|
Target: 5'- uGGcgCCGCCUuggcgccacgcaGUCUGGAAgg-CCGUGg -3' miRNA: 3'- -CCaaGGUGGA------------UAGACUUUaaaGGCAU- -5' |
|||||||
| 1627 | 5' | -45.1 | NC_001347.2 | + | 137290 | 1.1 | 0.04212 |
|
Target: 5'- gGGUUCCACCUAUCUGAAAUUUCCGUAc -3' miRNA: 3'- -CCAAGGUGGAUAGACUUUAAAGGCAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home