miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16270 5' -53.8 NC_004084.1 + 49185 0.66 0.754008
Target:  5'- -cGCUgGacgC-CCUGAUCGAGCAGgUCa -3'
miRNA:   3'- uaCGAgUa--GaGGACUGGCUCGUUgAG- -5'
16270 5' -53.8 NC_004084.1 + 47066 0.66 0.754008
Target:  5'- uGUGCUCGacUCgaaCCggcucGACCGAGCu-CUCa -3'
miRNA:   3'- -UACGAGU--AGa--GGa----CUGGCUCGuuGAG- -5'
16270 5' -53.8 NC_004084.1 + 7763 0.66 0.754008
Target:  5'- -cGCUCGUCaUUCaGGCCaGAGCggUUCu -3'
miRNA:   3'- uaCGAGUAG-AGGaCUGG-CUCGuuGAG- -5'
16270 5' -53.8 NC_004084.1 + 4691 0.66 0.743347
Target:  5'- -aGCUCGUCgag-GACCGAGcCGACg- -3'
miRNA:   3'- uaCGAGUAGaggaCUGGCUC-GUUGag -5'
16270 5' -53.8 NC_004084.1 + 45489 0.66 0.743347
Target:  5'- -gGCgucgaucagCGUCUaCCUGGCCGGGCcGgUCg -3'
miRNA:   3'- uaCGa--------GUAGA-GGACUGGCUCGuUgAG- -5'
16270 5' -53.8 NC_004084.1 + 54159 0.67 0.710701
Target:  5'- cGUGCUCGUUUCU--GCCGcGgAACUCg -3'
miRNA:   3'- -UACGAGUAGAGGacUGGCuCgUUGAG- -5'
16270 5' -53.8 NC_004084.1 + 8346 0.67 0.699639
Target:  5'- -cGCUCAucgUCUCCgagGACC-AGCucCUCa -3'
miRNA:   3'- uaCGAGU---AGAGGa--CUGGcUCGuuGAG- -5'
16270 5' -53.8 NC_004084.1 + 28000 0.67 0.677322
Target:  5'- --cUUCGUCUCgaGGCCGGGguAUUCg -3'
miRNA:   3'- uacGAGUAGAGgaCUGGCUCguUGAG- -5'
16270 5' -53.8 NC_004084.1 + 33389 0.7 0.520849
Target:  5'- gAUGCg-AUCUCCUcugGAUCGGGCGGCUg -3'
miRNA:   3'- -UACGagUAGAGGA---CUGGCUCGUUGAg -5'
16270 5' -53.8 NC_004084.1 + 50050 0.71 0.457678
Target:  5'- gAUGCUCGUC-CCUcACCGGGUGGCg- -3'
miRNA:   3'- -UACGAGUAGaGGAcUGGCUCGUUGag -5'
16270 5' -53.8 NC_004084.1 + 37744 0.72 0.427661
Target:  5'- aAUGUUgGUCUCUUcGCCGAGCcACUCc -3'
miRNA:   3'- -UACGAgUAGAGGAcUGGCUCGuUGAG- -5'
16270 5' -53.8 NC_004084.1 + 48468 1.09 0.001234
Target:  5'- gAUGCUCAUCUCCUGACCGAGCAACUCg -3'
miRNA:   3'- -UACGAGUAGAGGACUGGCUCGUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.