Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16271 | 5' | -54.5 | NC_004084.1 | + | 25626 | 0.68 | 0.635961 |
Target: 5'- aUCCCucGUCGAAgACGAucUCGCCGu--- -3' miRNA: 3'- -AGGGu-CAGCUUgUGCU--AGCGGCcuau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 4597 | 0.68 | 0.624951 |
Target: 5'- uUCCCGGagGAACACGucuaCGgCGGAg- -3' miRNA: 3'- -AGGGUCagCUUGUGCua--GCgGCCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 44817 | 0.69 | 0.615048 |
Target: 5'- aCCCGGUCGGugACGGUaucgagcugaccgagGUCGGAUc -3' miRNA: 3'- aGGGUCAGCUugUGCUAg--------------CGGCCUAu -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 27128 | 0.69 | 0.58107 |
Target: 5'- cUCCCAGaUCGuauccAACGCGA-CGUCGGAc- -3' miRNA: 3'- -AGGGUC-AGC-----UUGUGCUaGCGGCCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 18218 | 0.69 | 0.570183 |
Target: 5'- gUCCAGcUCGAGgugaACGAggUCGCCGGAg- -3' miRNA: 3'- aGGGUC-AGCUUg---UGCU--AGCGGCCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 56612 | 0.7 | 0.559348 |
Target: 5'- gUCgCCGGUCG---GCGAguUCGCCGGAUc -3' miRNA: 3'- -AG-GGUCAGCuugUGCU--AGCGGCCUAu -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 3452 | 0.7 | 0.516661 |
Target: 5'- -aCCuGUCGGAuCGCGAgCGCCGGGg- -3' miRNA: 3'- agGGuCAGCUU-GUGCUaGCGGCCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 14657 | 0.71 | 0.455307 |
Target: 5'- gCCCAGUCGAugccCGCGAgcgucccgGCCGGGUc -3' miRNA: 3'- aGGGUCAGCUu---GUGCUag------CGGCCUAu -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 23180 | 0.72 | 0.445462 |
Target: 5'- gUCCCAgagguggucgacGUCGAuCGCGAUCGUCGGc-- -3' miRNA: 3'- -AGGGU------------CAGCUuGUGCUAGCGGCCuau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 16851 | 0.72 | 0.445462 |
Target: 5'- gCUCA--CGGACGCGAUCGCCGGu-- -3' miRNA: 3'- aGGGUcaGCUUGUGCUAGCGGCCuau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 10885 | 0.74 | 0.321448 |
Target: 5'- -gCCGGaUGAugGCGAUCGUCGGGUAc -3' miRNA: 3'- agGGUCaGCUugUGCUAGCGGCCUAU- -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 50118 | 0.75 | 0.276787 |
Target: 5'- cUUCgAGUCGAGgccCGCGAUCGuCCGGAUGa -3' miRNA: 3'- -AGGgUCAGCUU---GUGCUAGC-GGCCUAU- -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 55392 | 0.76 | 0.24347 |
Target: 5'- aUCCCGGUaucgcCGAcauacucgGCAUGAUCGCCGGGg- -3' miRNA: 3'- -AGGGUCA-----GCU--------UGUGCUAGCGGCCUau -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 56968 | 0.78 | 0.197164 |
Target: 5'- gUCCCAGUaGucCAgGAUCGCCGGGUAc -3' miRNA: 3'- -AGGGUCAgCuuGUgCUAGCGGCCUAU- -5' |
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16271 | 5' | -54.5 | NC_004084.1 | + | 47382 | 1.07 | 0.001882 |
Target: 5'- cUCCCAGUCGAACACGAUCGCCGGAUAc -3' miRNA: 3'- -AGGGUCAGCUUGUGCUAGCGGCCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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